Basic Information
Locus ID:
Pt_Chr0108220
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 257472414 | 257476578 | + | Pt_Chr0108220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 57,197.99 Da | 46.69 | 87.80 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 92 | 166 | 3.24603E-15 | - |
| Pfam | PF00651 | BTB/POZ domain | 92 | 180 | 2.3E-15 | IPR000210 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 212 | 298 | 1.1E-4 | IPR011705 |
| SUPERFAMILY | SSF54695 | POZ domain | 92 | 180 | 8.63E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 220 | 323 | 5.9E-10 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 29 | 217 | 1.5E-18 | IPR011333 |
| SMART | SM00225 | BTB_4 | 85 | 183 | 1.3E-8 | IPR000210 |
| SMART | SM00875 | BACK_2 | 196 | 300 | 0.0081 | IPR011705 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 81 | 152 | 13.28089 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 82 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46260.1 | BTB/POZ/Kelch-associated protein. | 0 |
| RefSeq | XP_047071322.1 | BTB/POZ domain-containing protein At2g46260-like [Lolium rigidum] | 0 |
| O82343 | BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana OX=3702 GN=At2g46260 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6HZV3 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0239050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060465 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101990, Pt_Chr0106000, Pt_Chr0108220, Pt_Chr0601157 |
| Poaceae | Thinopyrum elongatum | 7 | Tel3E01G201600, Tel5E01G788100, Tel5E01G788500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG014670, gene_TRIDC3AG014680 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS3A02G118000.1, TraesCS3A02G118100.1 ... |