Basic Information
Locus ID:
Pt_Chr0108219
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 257441586 | 257464439 | - | Pt_Chr0108219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 115,344.40 Da | 48.42 | 93.44 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 56 | 134 | 5.01478E-15 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 507 | 575 | 1.76976E-9 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 685 | 759 | 1.32784E-13 | - |
| Pfam | PF07707 | BTB And C-terminal Kelch | 800 | 889 | 3.8E-5 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 508 | 579 | 1.9E-6 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 685 | 773 | 6.0E-14 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 58 | 148 | 1.5E-15 | IPR000210 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 167 | 266 | 1.1E-6 | IPR011705 |
| SUPERFAMILY | SSF54695 | POZ domain | 60 | 148 | 5.49E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 685 | 773 | 4.49E-14 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 508 | 579 | 5.38E-7 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 186 | 290 | 2.5E-8 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 496 | 586 | 6.7E-9 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 44 | 185 | 1.6E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 671 | 806 | 6.1E-17 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 807 | 916 | 4.2E-9 | - |
| SMART | SM00225 | BTB_4 | 480 | 592 | 0.0033 | IPR000210 |
| SMART | SM00225 | BTB_4 | 53 | 151 | 1.7E-11 | IPR000210 |
| SMART | SM00875 | BACK_2 | 790 | 893 | 0.032 | IPR011705 |
| SMART | SM00875 | BACK_2 | 165 | 268 | 2.5E-4 | IPR011705 |
| SMART | SM00225 | BTB_4 | 678 | 776 | 2.0E-11 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 47 | 120 | 14.687265 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 675 | 745 | 12.887932 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_051228871.1 | BTB/POZ domain-containing protein POB1-like [Lolium perenne] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I6XMR3 | BTB domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105999, Pt_Chr0108219 |