Basic Information
Locus ID:
Pt_Chr0108216
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 257372986 | 257394434 | + | Pt_Chr0108216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 108,751.52 Da | 44.61 | 89.75 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 137 | 204 | 6.10722E-11 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 575 | 640 | 2.90576E-12 | - |
| Pfam | PF07707 | BTB And C-terminal Kelch | 678 | 772 | 1.6E-7 | IPR011705 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 246 | 336 | 1.2E-5 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 130 | 217 | 2.8E-14 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 574 | 654 | 2.9E-12 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 574 | 654 | 3.92E-12 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 131 | 218 | 1.84E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 529 | 695 | 5.0E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 81 | 262 | 6.5E-18 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 263 | 360 | 3.6E-10 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 696 | 796 | 3.7E-10 | - |
| SMART | SM00875 | BACK_2 | 235 | 338 | 6.1E-4 | IPR011705 |
| SMART | SM00875 | BACK_2 | 670 | 774 | 2.9E-5 | IPR011705 |
| SMART | SM00225 | BTB_4 | 540 | 657 | 6.6E-6 | IPR000210 |
| SMART | SM00225 | BTB_4 | 92 | 221 | 4.0E-10 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 573 | 626 | 12.039969 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 120 | 190 | 13.859985 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_047071326.1 | BTB/POZ domain-containing protein POB1-like [Lolium rigidum] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | M8B568 | Kelch-like protein 17 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0105998, Pt_Chr0108216, Pt_Chr0108218 |