Basic Information
Locus ID:
Pt_Chr0108213
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 257263180 | 257267093 | + | Pt_Chr0108213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 52,128.63 Da | 44.89 | 83.30 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 48 | 8.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 102 | 3.4E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 101 | 280 | 2.48E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 58 | 1.9E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 50 | 1.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 52 | 8.517177 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 451 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044360982.1 | uncharacterized protein LOC123082803 [Triticum aestivum] | 0 |
| TrEMBL | A0A8R7U9Z6 | F-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0105994, Pt_Chr0108210, Pt_Chr0108213 |