Basic Information
Locus ID:
Pt_Chr0108201
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 256980038 | 256981850 | + | Pt_Chr0108201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 55,444.63 Da | 54.91 | 77.16 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 54 | 2.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 74 | 1.19E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 102 | 352 | 9.68E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 52 | 3.8E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 57 | 1.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 57 | 8.808615 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 397 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047071740.1 | uncharacterized protein LOC124680732 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6LVN9 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105983, Pt_Chr0105984, Pt_Chr0108200, Pt_Chr0108201 |