Basic Information
Locus ID:
Pt_Chr0108092
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 253044226 | 253057272 | - | Pt_Chr0108092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 149,779.02 Da | 50.93 | 76.82 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 843 | 880 | 4.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 844 | 908 | 2.35E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 843 | 880 | 2.1E-7 | - |
| SMART | SM00256 | fbox_2 | 844 | 884 | 1.9E-8 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1169 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 332 | - | - |
| Coils | Coil | Coil | 1167 | 1187 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047053327.1 | uncharacterized protein LOC124659501 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6EUN1 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0108092, Pt_Chr0605854 |