Basic Information
Locus ID:
Pt_Chr0108089
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 253016479 | 253018482 | + | Pt_Chr0108089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 38,941.11 Da | 27.84 | 90.68 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 185 | 6.27367E-58 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 212 | 366 | 5.89925E-76 | - |
| Pfam | PF00190 | Cupin | 210 | 352 | 6.2E-21 | IPR006045 |
| Pfam | PF00190 | Cupin | 18 | 168 | 1.3E-22 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 20 | 358 | 2.04E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 18 | 191 | 1.9E-27 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 209 | 369 | 6.8E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 209 | 353 | 6.2E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 13 | 171 | 1.4E-27 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 272 | 288 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 308 | 326 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 225 | 245 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 330 | 347 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 290 | 305 | 3.0E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_047061363.1 | 11S globulin seed storage protein 2-like [Lolium rigidum] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ER75 | 11S seed storage protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology