Basic Information
Locus ID:
Pt_Chr0108072
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 252554596 | 252558855 | - | Pt_Chr0108072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 18,470.36 Da | 47.98 | 102.68 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 27 | 70 | 1.8E-4 | IPR018957 |
| Pfam | PF06803 | Protein of unknown function (DUF1232) | 116 | 147 | 2.3E-7 | IPR010652 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 77 | 2.36E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 103 | 2.0E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 70 | 3.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 71 | 9.89275 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22510.1 | RING/U-box protein with domain of unknown function (DUF 1232). | 0 |
| RefSeq | XP_051228447.1 | uncharacterized protein LOC127345948 [Lolium perenne] | 0 |
| Q5PPX5 | E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis OX=8355 GN=rnf170 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2DH81 | E3 ubiquitin-protein ligase RNF170 OS=Brachypodium distachyon OX=15368 GN=BRADI_2g61450v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12246, jg1288, jg23290, jg28389, jg30870 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_17190, gene_17543, gene_23467 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022725 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3758, Sbi_jg49012 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6227 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000710 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10764, Sgl16119 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000033196, gene:ENSEOMG00000047064 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0027350 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30034220, pistato.v30111940, pistato.v30113160 |
| Apiaceae | Apium graveolens | 2 | Ag4G01233, Ag6G01867 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002550 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701296, gene-LOC103711272 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2598.V1.1, AsparagusV1_10.549.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G04811, Ftri14G23567, Ftri3G27579, Ftri9G22853 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G22510.2, AT1G72175.1, AT4G33940.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008870m.g.v1.0, Thhalv10019196m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g27260.v2.2, Sp7g31670.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g086640.2N, BniB03g030310.2N, BniB03g050340.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2528 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2751 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00034.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g01470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9437 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1358, evm.TU.LG08.31 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00001995, Pov_00022386, Pov_00028197, Pov_00028200 ... |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G37227, Lb5G26984, Lb5G29443, Lb8G35694, Lb8G35895 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH01.518, BH01.217, CH01.58 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0209000, gene-QOZ80_3BG0254040 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0323970.1, HORVU.MOREX.r3.5HG0530970.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_058807, gene-QYE76_058847, gene-QYE76_060348 |
| Poaceae | Oryza coarctata | 1 | Oco05G028480 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G017400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106113, Pt_Chr0106164, Pt_Chr0108072 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000770, Chr04G032250, Chr07G031310, Chr12G032270 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G829800, Tel3E01G830000, Tel5E01G806600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG071660, gene_TRIDC3BG082020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3B02G567600.1, TraesCS3D02G511300.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15612 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g87 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1365 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.288 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4903, nbisL1-mrna-9571 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20142 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18223, nbisL1-mrna-9846 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.779, evm.TU.utg000018l.569 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003516, Maker00005506 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2478, nbisL1-mrna-2942 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6095 |
| Salicaceae | Populus euphratica | 2 | populus_peu08975, populus_peu18971 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132598679, gene-LOC132598681, gene-LOC132622172 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002906800, SOLCI002906900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003317, gene-LOC107007121, gene-LOC107007149 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26524_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2409 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42370.v3.1 |