Basic Information
Locus ID:
Pt_Chr0107973
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 249158984 | 249165854 | + | Pt_Chr0107973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 95,750.64 Da | 49.92 | 89.53 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 694 | 762 | 8.8E-19 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 622 | 690 | 4.7E-21 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 773 | 841 | 9.8E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 692 | 771 | 1.06E-20 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 767 | 843 | 3.09E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 604 | 691 | 1.55E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 611 | 691 | 1.0E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 768 | 848 | 8.1E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 692 | 767 | 1.5E-27 | - |
| SMART | SM00213 | ubq_7 | 771 | 844 | 1.8E-8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 692 | 763 | 1.3E-18 | IPR000626 |
| SMART | SM00213 | ubq_7 | 620 | 691 | 1.8E-21 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 771 | 848 | 13.77215 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 692 | 767 | 18.12723 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 620 | 690 | 21.720171 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 702 | 722 | 1.0E-17 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 744 | 765 | 1.0E-17 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 723 | 743 | 1.0E-17 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 346 | - | - |
| Coils | Coil | Coil | 531 | 579 | - | - |
| Coils | Coil | Coil | 234 | 268 | - | - |
| Coils | Coil | Coil | 163 | 190 | - | - |
| Coils | Coil | Coil | 368 | 388 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044347048.1 | uncharacterized protein LOC123068527 [Triticum aestivum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FFG3 | Bromo domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11775, jg22963 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8461 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036272 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40055, Sbi_jg55383 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014028 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl00253, Sgl05306, Sgl05781, Sgl12210, Sgl17582, Sgl23688 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000018313, gene:ENSEOMG00000020225 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0019340, CQ.Regalona.r1.1BG0003680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049350 |
| Apiaceae | Apium graveolens | 1 | Ag11G03570 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001780, COCNU_10G001260 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701489, gene-LOC103703867, gene-LOC120103805 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.381.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G09565, Ftri1G06661 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008122m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17770.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB02g005260.2N, BniB03g008480.2N, BniB03g028890.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0883 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0961 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g19960, gene.Thate01g24080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1766 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.703 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002560 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32137 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.325, BH02.354, CH02.391 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0327470 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0096400.2, HORVU.MOREX.r3.2HG0096420.1 |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_007096, gene-QYE76_019617, gene-QYE76_019618 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G000820, Oco07G000830, Oco08G000490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g02680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G032200 |
| Poaceae | Puccinellia tenuiflora | 12 | Pt_Chr0100854, Pt_Chr0100859, Pt_Chr0107973, Pt_Chr0107976 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G018350, Chr25G016350, Chr26G001460, Chr30G015010 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G610700, Tel2E01G025500, Tel2E01G026300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG055030, gene_TRIDC1BG062990 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS1A02G374100.1, TraesCS1B02G393900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121210_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37440, nbis-gene-53541 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19255, Zma_g20833 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.2, evm.TU.LG12.1674, evm.TU.LG13.1117 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12250 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_17_RagTag.2, evm.TU.Scaffold_7_RagTag.432 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18991, nbisL1-mrna-9071 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11561, nbisL1-mrna-6177 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13040 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.487, evm.TU.utg000018l.383 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003604, Maker00011719 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13377, nbisL1-mrna-8753 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11091 |
| Salicaceae | Populus euphratica | 2 | populus_peu15351, populus_peu32996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628120 |
| Solanaceae | Solanum chilense | 1 | SOLCI004448700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016258 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31269_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2862 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10720.v3.1, Zosma04g23050.v3.1 |