Basic Information
Locus ID:
Pt_Chr0107941
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 248528577 | 248531230 | - | Pt_Chr0107941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 51,919.62 Da | 60.97 | 95.85 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 49 | 4.9E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 64 | 1.19E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 160 | 418 | 1.8E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 54 | 1.6E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 125 | 438 | 1.7E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 60 | 8.729132 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047054410.1 | uncharacterized protein LOC124660623 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6N3U1 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH03.3573, AH05.688, BH03.3781, CH03.3284, CH03.4006 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0005700, gene-QOZ80_1BG0054350 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0204110.1, HORVU.MOREX.r3.5HG0531250.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_013401, gene-QYE76_035003, gene-QYE76_035004 ... |
| Poaceae | Oryza coarctata | 4 | Oco02G006680, Oco02G006740, Oco10G000410, Oco10G010300 |
| Poaceae | Oryza sativa | 5 | LOC_Os01g14270.1, LOC_Os05g01620.1, LOC_Os05g39660.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G001500 |
| Poaceae | Puccinellia tenuiflora | 15 | Pt_Chr0102173, Pt_Chr0102191, Pt_Chr0102968, Pt_Chr0105483 ... |
| Poaceae | Thinopyrum elongatum | 16 | Tel1E01G111800, Tel2E01G973400, Tel3E01G038200 ... |
| Poaceae | Triticum dicoccoides | 15 | gene_TRIDC1AG002220, gene_TRIDC2AG078630 ... |
| Poaceae | Triticum aestivum | 46 | TraesCS1A02G022900.1, TraesCS1A02G051600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18401 |