Basic Information
Locus ID:
Pt_Chr0107882
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 246642180 | 246644195 | + | Pt_Chr0107882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 45,149.71 Da | 50.37 | 76.10 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 294 | 4.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 20 | 298 | 1.26E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 167 | 385 | 1.9E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 211 | 251 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 295 | 0.0033 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_044369966.1 | autophagy-related protein 18a-like isoform X2 [Triticum aestivum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IPQ7 | Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology