Basic Information
Locus ID:
Pt_Chr0107870
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 246158323 | 246162915 | - | Pt_Chr0107870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 112,704.70 Da | 34.58 | 98.50 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 762 | 1038 | 4.3748E-87 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 761 | 961 | 1.6E-25 | IPR001245 |
| Pfam | PF13516 | Leucine Rich repeat | 293 | 308 | 0.22 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 317 | 339 | 0.43 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 92 | 132 | 1.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 472 | 532 | 1.5E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 69 | 5.9E-4 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 759 | 1035 | 4.63E-41 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 100 | 554 | 1.18E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 745 | 833 | 2.5E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 835 | 1040 | 3.3E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 586 | 3.2E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 205 | 1.5E-38 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 118 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 519 | 543 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 471 | 495 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 267 | 291 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 316 | 338 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 119 | 142 | 58.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 756 | 1038 | 24.569851 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 668 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27060.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_051181437.1 | probable inactive receptor kinase At5g10020 isoform X1 [Lolium perenne] | 0 |
| Q0WR59 | Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6JHM3 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20923 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2506, Sbi_jg59689 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78800, Sgl81273 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30055030 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007670, scaffold000460G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713859 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.43.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G27060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001893m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g08210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g016230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1472 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1471 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-574 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.68 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026647 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3818, BH01.4157, CH01.4435 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0246360, gene-QOZ80_3BG0281830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0380480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068301 |
| Poaceae | Oryza coarctata | 2 | Oco05G012130, Oco06G014280 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g20450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G371000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107870 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G033400, Chr04G010020, Chr07G001770, Chr12G006190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G320000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG017650, gene_TRIDC4BG034640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G127200.1, TraesCS4B02G177400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb049870_P001, Zm00001eb238200_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1775 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1322 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.599 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30469 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11214 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15983 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.327 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015815 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4246 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15194 |
| Salicaceae | Populus euphratica | 2 | populus_peu08487, populus_peu36854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600709 |
| Solanaceae | Solanum chilense | 1 | SOLCI002775600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031273 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29674_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0074 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32880.v3.1 |