Basic Information
Locus ID:
Pt_Chr0107667
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 238269671 | 238278244 | + | Pt_Chr0107667 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 58,802.09 Da | 35.90 | 84.92 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 292 | 500 | 7.85461E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 490 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 368 | 405 | 0.0041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 359 | 6.9E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 292 | 503 | 6.33E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 268 | 513 | 5.3E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 449 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 318 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 490 | 9.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 373 | 414 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 360 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 360 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 458 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 499 | 9.40565 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.3 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_051212490.1 | pre-mRNA-processing factor 19-like [Lolium perenne] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9WDX6 | Pre-mRNA-processing factor 19 OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101359, Pt_Chr0107667, Pt_Chr0501995, Pt_Chr0505332 |