Basic Information
Locus ID:
Pt_Chr0107634
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 237314434 | 237319468 | + | Pt_Chr0107634 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 43,356.93 Da | 44.86 | 85.66 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 163 | 235 | 1.5E-4 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 54 | 339 | 4.63E-27 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 351 | 1.4E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 85 | 123 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 178 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 280.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_003577371.1 | SEC12-like protein 2 [Brachypodium distachyon] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | I1IKG4 | ANAPC4_WD40 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100839035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology