Basic Information
Locus ID:
Pt_Chr0107630
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 237234938 | 237239772 | + | Pt_Chr0107630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 36,199.86 Da | 39.16 | 88.17 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 36 | 84 | 5.41604E-16 | - |
| Pfam | PF12906 | RING-variant domain | 36 | 83 | 4.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 88 | 1.41E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 98 | 2.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 35 | 84 | 1.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 28 | 90 | 20.095779 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_047087269.1 | uncharacterized protein LOC124698925 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6HVU0 | RING-CH-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology