Basic Information
Locus ID:
Pt_Chr0107521
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 233746859 | 233749596 | + | Pt_Chr0107521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 72,340.58 Da | 60.11 | 76.79 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 237 | 499 | 7.1E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 172 | 4.47E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 209 | 8.4E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 25 | 179 | 1.2E-5 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 236 | 523 | 88.344879 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 74 | - | - |
| Coils | Coil | Coil | 86 | 116 | - | - |
| Coils | Coil | Coil | 580 | 600 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66560.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_051178467.1 | BTB/POZ domain-containing protein At5g66560-like [Lolium perenne] | 0 |
| Q94A73 | BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana OX=3702 GN=At5g66560 PE=2 SV=2 | 0 | |
| TrEMBL | F2EH84 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17489, jg40101 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026655 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51506, Sbi_jg5844 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013477 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34697, Sgl40108 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000189, gene:ENSEOMG00000003367 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018420, CQ.Regalona.r1.6BG0019560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207200 |
| Apiaceae | Apium graveolens | 1 | Ag10G02264 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017940, COCNU_13G008380 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696928, gene-LOC103709194 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.828.V1.1, AsparagusV1_03.829.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G25732, Ftri1G09555 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G50840.1, AT5G66560.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003788m.g.v1.0, Thhalv10010316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30150.v2.2, Sp5g11380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g015560.2N, BniB08g064750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1671 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00330 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g30570, gene.Thate06g13460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10532, nbisL1-mrna-7063 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024031 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36134 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.26, BH01.607, BH01.808, CH01.588, CH01.807 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214550, gene-QOZ80_3AG0216940 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0509260.1, HORVU.MOREX.r3.5HG0513170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_061612, gene-QYE76_061998 |
| Poaceae | Oryza coarctata | 4 | Oco05G023080, Oco05G024580, Oco06G023960, Oco06G025520 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g52880.1, LOC_Os03g55830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G068300, gene-BS78_01G087500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107082, Pt_Chr0107391, Pt_Chr0107521, Pt_Ctg00193 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004220, Chr01G005740, Chr04G029440, Chr07G028520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G603600, Tel5E01G637900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG035740, gene_TRIDC5AG055490 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G298700.1, TraesCS2D02G507400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb056580_P002, Zm00001eb213970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15014, nbis-gene-16303 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2698, Zma_g516 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1419, evm.TU.LG05.236, evm.TU.LG12.68 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1947 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17189 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16527, nbisL1-mrna-3135 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11844 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1186 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006928 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15553 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3152 |
| Salicaceae | Populus euphratica | 2 | populus_peu14277, populus_peu23490 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622312 |
| Solanaceae | Solanum chilense | 1 | SOLCI003384300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011764 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4788_chr03_-, gene_2801 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2138, TC11G0516 |
| Zosteraceae | Zostera marina | 1 | Zosma04g07340.v3.1 |