Basic Information
Locus ID:
Pt_Chr0107489
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
DBR1
Description:
Lariat debranching enzyme, C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 233063673 | 233075523 | - | Pt_Chr0107489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 83,777.73 Da | 39.59 | 77.46 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 443 | 739 | 2.24226E-100 | - |
| CDD | cd00844 | MPP_Dbr1_N | 3 | 245 | 1.41268E-151 | IPR041816 |
| Pfam | PF05011 | Lariat debranching enzyme, C-terminal domain | 229 | 349 | 4.3E-32 | IPR007708 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 479 | 3.8E-7 | IPR001680 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 1 | 215 | 2.7E-10 | IPR004843 |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 521 | 3.5E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 701 | 739 | 3.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 565 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 608 | 6.9E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 696 | 7.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 614 | 651 | 0.0035 | IPR001680 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 1 | 247 | 1.6E-25 | IPR029052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 441 | 739 | 2.04E-95 | IPR036322 |
| Gene3D | G3DSA:3.60.21.10 | - | 8 | 232 | 4.4E-6 | IPR029052 |
| Gene3D | G3DSA:2.130.10.10 | - | 427 | 743 | 3.4E-130 | IPR015943 |
| SMART | SM00320 | WD40_4 | 440 | 479 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 521 | 1.2E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 566 | 2.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 651 | 8.2E-4 | IPR001680 |
| SMART | SM01124 | DBR1_2 | 221 | 352 | 1.7E-42 | IPR007708 |
| SMART | SM00320 | WD40_4 | 569 | 608 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 740 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 696 | 0.0037 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 447 | 479 | 12.921038 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 576 | 612 | 12.103769 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 489 | 522 | 14.845573 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 619 | 660 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 488 | 15.922199 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 679 | 705 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 534 | 575 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 619 | 656 | 8.861059 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 534 | 571 | 13.553762 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 489 | 522 | 18.1278 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 576 | 617 | 15.955617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 553 | 567 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 638 | 652 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 508 | 522 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 683 | 697 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 595 | 609 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 553 | 567 | 2.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 508 | 522 | 2.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 595 | 609 | 2.5E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 410 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31770.1 | debranching enzyme 1. Encodes a RNA lariat debranching enzyme required for embryogenesis. | 0 |
| RefSeq | XP_051178589.1 | lariat debranching enzyme [Lolium perenne] | 0 |
| Q6AU07 | Lariat debranching enzyme OS=Oryza sativa subsp. japonica OX=39947 GN=DBR1 PE=2 SV=1 | 0 | |
| TrEMBL | I1GNU0 | DBR1 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100845942 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1491 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8824 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036471 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39550, Sbi_jg39551, Sbi_jg54773 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14785 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029058 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12692, Sgl17939 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019737, gene:ENSEOMG00000032963 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020250, CQ.Regalona.r1.1BG0004690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251290 |
| Apiaceae | Apium graveolens | 1 | Ag10G02835 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G001000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707651 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2366.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri2G27091, Ftri2G32215, Ftri8G07177 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29560.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g085510.2N, BniB03g010230.2N, BniB06g035350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2495 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0363s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.878 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025024, Pov_00037140 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23390 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.763, BH01.905, CH01.923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0218160, gene-QOZ80_3BG0263440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0338760.2 |
| Poaceae | Oryza coarctata | 3 | Oco05G022240, Oco06G022790, Oco06G023130 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G098000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107489, Pt_Chr0107497 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G027610, Chr07G026520, Chr10G018910, Chr19G014190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G096000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040360, gene_TRIDC4BG008760 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G258100.1, TraesCS4B02G056400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb215780_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14914, nbis-gene-15987 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2908 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.1728 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.928, evm.TU.Scaffold_10_RagTag.929 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13551 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10813 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9175 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.225 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004040 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3715 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7787 |
| Salicaceae | Populus euphratica | 1 | populus_peu04652 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603337 |
| Solanaceae | Solanum chilense | 1 | SOLCI004546700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107024069, gene-LOC114077932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1808 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2771 |
| Zosteraceae | Zostera marina | 2 | Zosma06g07340.v3.1, Zosma06g07370.v3.1 |