Basic Information
Locus ID:
Pt_Chr0107322
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 228212402 | 228218470 | + | Pt_Chr0107322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 50,104.84 Da | 41.05 | 81.53 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14132 | STKc_CK2_alpha | 89 | 418 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 108 | 418 | 2.3E-58 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 78 | 423 | 2.43E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 108 | 184 | 1.4E-101 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 185 | 418 | 1.4E-101 | - |
| SMART | SM00220 | serkin_6 | 108 | 418 | 4.0E-67 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 108 | 418 | 41.318642 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 114 | 137 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 221 | 233 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23070.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_044984952.1 | casein kinase II subunit alpha-2-like [Hordeum vulgare subsp. vulgare] | 0 |
| O64816 | Casein kinase II subunit alpha-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CKA4 PE=2 SV=1 | 0 | |
| TrEMBL | F2E3D3 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology