Basic Information
Locus ID:
Pt_Chr0107228
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 226241280 | 226260266 | + | Pt_Chr0107228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 178,905.20 Da | 46.74 | 73.94 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06613 | STKc_MAP4K3_like | 1066 | 1321 | 4.78594E-161 | - |
| Pfam | PF00153 | Mitochondrial carrier protein | 337 | 398 | 6.5E-15 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 133 | 210 | 2.0E-14 | IPR018108 |
| Pfam | PF00069 | Protein kinase domain | 1067 | 1321 | 1.8E-67 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 538 | 572 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 588 | 609 | 0.25 | IPR001680 |
| Pfam | PF00153 | Mitochondrial carrier protein | 227 | 313 | 4.4E-15 | IPR018108 |
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 660 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 665 | 703 | 0.0094 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1066 | 1322 | 8.77E-87 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 538 | 787 | 1.33E-42 | IPR036322 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 121 | 400 | 1.15E-57 | IPR023395 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 789 | 6.9E-45 | IPR015943 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 129 | 406 | 7.3E-59 | IPR023395 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1063 | 1362 | 1.2E-97 | - |
| SMART | SM00320 | WD40_4 | 621 | 660 | 0.078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 616 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 663 | 704 | 1.8E-5 | IPR001680 |
| SMART | SM00220 | serkin_6 | 1067 | 1321 | 7.6E-98 | IPR000719 |
| SMART | SM00320 | WD40_4 | 534 | 572 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 752 | 788 | 85.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1067 | 1321 | 49.558765 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 684 | 713 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 331 | 414 | 16.270159 | IPR018108 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 540 | 581 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 635 | 669 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 121 | 209 | 16.827938 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 224 | 312 | 21.483261 | IPR018108 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1073 | 1096 | - | IPR017441 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 691 | 705 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 911 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1443 | 1472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 945 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 836 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69220.1 | Protein kinase superfamily protein. Encodes a putative serine/threonine kinase (SIK1). | 0 |
| RefSeq | XP_051229058.1 | serine/threonine-protein kinase 1-like [Lolium perenne] | 0 |
| O24527 | Serine/threonine-protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0P1H1 | Protein kinase domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34836, jg9248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18856 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007629 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g136320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14035, Sbi_jg51923 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9948 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023553, GOSA_00023554 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34859, Sgl40253 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003050, gene:ENSEOMG00000003646 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0016970, CQ.Regalona.r1.6BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30226970 |
| Apiaceae | Apium graveolens | 1 | Ag6G00447 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G011310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1971.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G26331 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G69220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018124m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g24270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g046590.2N, BniB05g066160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0426 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0436 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03070 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0038s00019.v1.0, Dusal.0038s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.391 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015287 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32591 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.692, CH01.674, Contig309.50 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0215610, gene-QOZ80_3BG0260700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0511440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061779 |
| Poaceae | Oryza coarctata | 2 | Oco05G023930, Oco06G024810 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g54780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G076900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107228 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G028840, Chr07G027840, Chr12G037380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G623800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG057130, gene_TRIDC5BG061270 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G392500.1, TraesCS5B02G397300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057640_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15100, nbis-gene-16203 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2767, Zma_g457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.505, evm.TU.LG21.202 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g06300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.533 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26694 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11802 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15830 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.267 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002699 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11398 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23529 |
| Salicaceae | Populus euphratica | 1 | populus_peu20715 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641950 |
| Solanaceae | Solanum chilense | 1 | SOLCI003152200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020616 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17948 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0468 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22620.v3.1 |