Basic Information
Locus ID:
Pt_Chr0107106
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 223311077 | 223313643 | - | Pt_Chr0107106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 24,434.51 Da | 42.61 | 62.36 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 23 | 220 | 7.6E-73 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 117 | 210 | 2.16E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 116 | 223 | 1.5E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 121 | 211 | 23.054544 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14550.1 | indole-3-acetic acid inducible 14. IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. | 0 |
| RefSeq | XP_047092481.1 | auxin-responsive protein IAA13-like [Lolium rigidum] | 0 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LTA7 | Auxin-responsive protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology