Basic Information
Locus ID:
Pt_Chr0107031
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 221379472 | 221382432 | - | Pt_Chr0107031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 45,808.70 Da | 48.67 | 86.05 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 5 | 44 | 3.1E-7 | IPR001810 |
| Pfam | PF01070 | FMN-dependent dehydrogenase | 348 | 396 | 3.7E-12 | IPR000262 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 348 | 398 | 5.64E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 99 | 2.75E-12 | IPR036047 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 345 | 405 | 6.2E-14 | IPR013785 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 42 | 1.2E-5 | - |
| SMART | SM00256 | fbox_2 | 5 | 47 | 1.8E-4 | IPR001810 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14415.1 | Aldolase-type TIM barrel family protein. | 0 |
| RefSeq | XP_047092686.1 | uncharacterized protein LOC124704475 [Lolium rigidum] | 0 |
| B8AKX6 | Glycolate oxidase 1 OS=Oryza sativa subsp. indica OX=39946 GN=GLO1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6KRD6 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0318930.1.CDS1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_002022, gene-QYE76_002023, gene-QYE76_057913 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os10g05500.1 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0105279, Pt_Chr0105287, Pt_Chr0105324, Pt_Chr0105325 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G011010, Chr12G025920 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G668600 |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G528600.1.cds1, TraesCS3D02G477400.1.cds1 ... |