Basic Information
Locus ID:
Pt_Chr0106931
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 218626240 | 218632391 | - | Pt_Chr0106931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 77,811.73 Da | 40.22 | 63.98 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 436 | 717 | 8.76692E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 603 | 634 | 4.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 549 | 7.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 437 | 464 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 506 | 1.2E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.8E-8 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 437 | 717 | 9.16E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 563 | 717 | 1.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 398 | 562 | 2.2E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 595 | 634 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 550 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 464 | 9.5E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 637 | 676 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 506 | 4.1E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 685 | 717 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 517 | 559 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 473 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.417476 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 517 | 551 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 685 | 717 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 474 | 506 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 506 | 13.85027 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010228669.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Brachypodium distachyon] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | I1GKI2 | LisH domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100841065 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology