Basic Information
Locus ID:
Pt_Chr0106930
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 218518499 | 218524780 | + | Pt_Chr0106930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 84,743.17 Da | 48.42 | 60.56 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 491 | 772 | 6.12433E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 492 | 519 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 569 | 604 | 8.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 531 | 561 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 658 | 689 | 4.6E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 3.1E-8 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 492 | 772 | 1.27E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 620 | 772 | 5.9E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 466 | 619 | 2.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 522 | 561 | 4.1E-7 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 480 | 519 | 9.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 692 | 731 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 733 | 772 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 689 | 3.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 772 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 740 | 772 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 529 | 561 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 487 | 528 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 614 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 606 | 8.544697 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.417476 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 529 | 561 | 13.85027 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 290 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
| Coils | Coil | Coil | 309 | 369 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010228669.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Brachypodium distachyon] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | I1GKI2 | LisH domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100841065 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology