Basic Information
Locus ID:
Pt_Chr0106929
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 218511629 | 218517481 | + | Pt_Chr0106929 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 134,209.42 Da | 52.34 | 62.58 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 955 | 1212 | 3.20023E-116 | - |
| CDD | cd06410 | PB1_UP2 | 160 | 257 | 3.39401E-46 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 951 | 1211 | 9.6E-64 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 173 | 258 | 3.1E-16 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 172 | 263 | 7.06E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 940 | 1209 | 4.1E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 942 | 1036 | 4.5E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 175 | 259 | 1.3E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1037 | 1230 | 4.8E-55 | - |
| SMART | SM00220 | serkin_6 | 949 | 1218 | 7.9E-58 | IPR000719 |
| SMART | SM00666 | PB1_new | 171 | 259 | 1.3E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 949 | 1215 | 40.908756 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1074 | 1086 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 955 | 980 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1139 | 1161 | 1.3E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1183 | 1205 | 1.3E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1031 | 1044 | 1.3E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1068 | 1086 | 1.3E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_047092932.1 | uncharacterized protein LOC124704706 [Lolium rigidum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6Y0G0 | Protein kinase domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology