Basic Information
Locus ID:
Pt_Chr0106613
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 210912365 | 210914859 | - | Pt_Chr0106613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 69,979.36 Da | 41.39 | 86.62 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 256 | 288 | 1.13998E-8 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 256 | 298 | 4.3E-8 | IPR001881 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 366 | 634 | 5.5E-46 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 16 | 55 | 1.9E-7 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 252 | 300 | 7.53E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 367 | 634 | 1.48E-65 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 259 | 301 | 6.8E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 352 | 439 | 2.4E-20 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 211 | 258 | 2.2E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 643 | 3.7E-53 | - |
| SMART | SM00181 | egf_5 | 259 | 299 | 0.0057 | IPR000742 |
| SMART | SM00179 | egfca_6 | 256 | 299 | 3.0E-9 | IPR001881 |
| SMART | SM00220 | serkin_6 | 365 | 638 | 1.6E-30 | IPR000719 |
| SMART | SM00181 | egf_5 | 217 | 255 | 13.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 365 | 638 | 36.442413 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 256 | 292 | 11.784428 | IPR000742 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 274 | 285 | - | IPR000152 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 371 | 393 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 256 | 283 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 489 | 501 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_044361219.1 | wall-associated receptor kinase 1-like [Triticum aestivum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1C7A190 | SnTox1 sensitivity protein OS=Triticum turgidum subsp. durum OX=4567 GN=Snn1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology