Basic Information
Locus ID:
Pt_Chr0106602
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 210782809 | 210784995 | - | Pt_Chr0106602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 82,114.62 Da | 44.73 | 87.05 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 410 | 535 | 2.10103E-22 | IPR002083 |
| Pfam | PF00917 | MATH domain | 430 | 535 | 1.1E-4 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 197 | 308 | 8.3E-22 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 563 | 675 | 1.9E-14 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 192 | 308 | 3.73E-24 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 552 | 675 | 3.56E-18 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 405 | 542 | 2.29E-27 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 189 | 308 | 1.1E-26 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 309 | 388 | 6.1E-6 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 541 | 708 | 1.1E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 406 | 540 | 2.1E-24 | IPR008974 |
| SMART | SM00225 | BTB_4 | 572 | 678 | 9.5E-13 | IPR000210 |
| SMART | SM00225 | BTB_4 | 202 | 309 | 1.2E-17 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 408 | 535 | 18.780064 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 202 | 266 | 16.217733 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 572 | 637 | 13.322253 | IPR000210 |
| Coils | Coil | Coil | 663 | 683 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_047057868.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S3J8 | BTB domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF012500110CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |