Basic Information
Locus ID:
Pt_Chr0106552
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 209465073 | 209471031 | + | Pt_Chr0106552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 28,977.41 Da | 32.14 | 75.30 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 21 | 94 | 3.85863E-22 | - |
| Pfam | PF00240 | Ubiquitin family | 23 | 96 | 9.4E-14 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 232 | 268 | 7.9E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 106 | 162 | 2.7E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 21 | 101 | 2.07E-18 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 227 | 268 | 3.51E-8 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 106 | 173 | 2.99E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 100 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 224 | 268 | 4.2E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 103 | 166 | 5.1E-12 | - |
| SMART | SM00213 | ubq_7 | 21 | 95 | 2.4E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 96 | 161 | 0.61 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 99 | 17.343315 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 107 | 165 | 10.113883 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 229 | 268 | 10.908291 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 186 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16190.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047081078.1 | ubiquitin receptor RAD23b-like isoform X2 [Lolium rigidum] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A453NI32 | Ubiquitin receptor RAD23 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology