Basic Information
Locus ID:
Pt_Chr0106506
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 208587294 | 208593924 | + | Pt_Chr0106506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 67,858.84 Da | 45.32 | 87.12 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 45 | 164 | 3.38432E-15 | IPR044730 |
| Pfam | PF00069 | Protein kinase domain | 310 | 528 | 9.0E-43 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 169 | 240 | 2.3E-14 | IPR000535 |
| Pfam | PF13456 | Reverse transcriptase-like | 46 | 166 | 8.3E-12 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 42 | 169 | 3.03E-6 | IPR012337 |
| SUPERFAMILY | SSF49354 | PapD-like | 155 | 268 | 8.9E-25 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 290 | 528 | 3.78E-65 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 280 | 378 | 4.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 400 | 566 | 2.1E-40 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 147 | 259 | 1.4E-25 | IPR013783 |
| SMART | SM00220 | serkin_6 | 308 | 557 | 4.2E-23 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 126 | 255 | 18.07827 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 308 | 605 | 35.45303 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 314 | 337 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 443 | 455 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_051177033.1 | pollen receptor-like kinase 1 [Lolium perenne] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453MIS6 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB08g075440.2N |
| Poaceae | Echinochloa crus-galli | 6 | BH05.3487, BH05.3770, BH06.1905, BH06.1907, CH05.3630 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0355810 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0214170.1, HORVU.MOREX.r3.2HG0214180.1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_008823, gene-QYE76_008829, gene-QYE76_008831 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G101700, gene-BS78_10G170000 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0106506, Pt_Chr0106736, Pt_Chr0300006, Pt_Chr0307037 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G070800, Tel2E01G985800, Tel3E01G183300 |
| Poaceae | Triticum dicoccoides | 12 | gene_TRIDC2AG004670, gene_TRIDC2AG079400 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS1D02G031300.1, TraesCS2A02G024200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb390200_P001 |