Basic Information
Locus ID:
Pt_Chr0106422
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 205666066 | 205675108 | + | Pt_Chr0106422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 53,879.27 Da | 41.17 | 82.82 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 32 | 132 | 2.9E-18 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 252 | 420 | 5.2E-24 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 244 | 446 | 1.5E-37 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 26 | 135 | 1.2E-21 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 143 | 236 | 1.6E-7 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 237 | 432 | 1.4E-46 | - |
| SMART | SM00220 | serkin_6 | 130 | 424 | 8.8E-5 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 26 | 135 | 18.145386 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 130 | 429 | 22.336679 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 140 | 240 | 10.170485 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 273 | 285 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02410.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_047071625.1 | cysteine-rich receptor-like protein kinase 10 [Lolium rigidum] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6U3R7 | Cysteine-rich receptor-like protein kinase 25 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.601, CH01.3028, CH04.309 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_003593, gene-QYE76_017906, gene-QYE76_019077 ... |
| Poaceae | Oryza coarctata | 1 | Oco09G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g10540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G170900, gene-BS78_08G007300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0106389, Pt_Chr0106422, Pt_Chr0501231, Pt_Chr0604613 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007730, Chr13G017140 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G497600, Tel2E01G092800, Tel2E01G1016400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G628100.1, TraesCS2B02G628200.1 ... |