Basic Information
Locus ID:
Pt_Chr0106389
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 204738905 | 204746734 | + | Pt_Chr0106389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 78,443.03 Da | 41.63 | 84.78 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 358 | 647 | 2.5E-44 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 48 | 148 | 5.2E-18 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 175 | 253 | 1.6E-6 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 658 | 5.33E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 42 | 151 | 2.1E-21 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 159 | 256 | 1.6E-11 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 436 | 655 | 1.5E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 323 | 433 | 6.3E-27 | - |
| SMART | SM00220 | serkin_6 | 354 | 647 | 1.3E-19 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 42 | 151 | 18.145386 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 652 | 36.908833 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 156 | 256 | 12.397301 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 360 | 385 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 496 | 508 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23190.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 11. Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_047071625.1 | cysteine-rich receptor-like protein kinase 10 [Lolium rigidum] | 0 |
| Q9ZP16 | Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CRK11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6U3R7 | Cysteine-rich receptor-like protein kinase 25 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.601, CH01.3028, CH04.309 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_003593, gene-QYE76_017906, gene-QYE76_019077 ... |
| Poaceae | Oryza coarctata | 1 | Oco09G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g10540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G170900, gene-BS78_08G007300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0106389, Pt_Chr0106422, Pt_Chr0501231, Pt_Chr0604613 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007730, Chr13G017140 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G497600, Tel2E01G092800, Tel2E01G1016400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G628100.1, TraesCS2B02G628200.1 ... |