halophFGD

Basic Information

Locus ID: Pt_Chr0106360

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	204141644	204142849	+	Pt_Chr0106360

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.11	45,405.67 Da	46.13	83.44	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	57	4.5E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	6	65	1.03E-8	IPR036047

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_051183286.1	uncharacterized protein LOC127297072 [Lolium perenne]	0
TrEMBL	A0A7H4LNR4	Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS4883 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	20	AH02.2246, AH02.2248, AH05.3340, AH05.3346, AH05.3347 ... AH06.1300, BH02.2347, BH02.2350, BH05.3349, BH05.3350, BH05.3351, BH05.3434, CH02.2522, CH02.2525, CH02.2526, CH02.2527, CH05.3460, CH05.3461, CH05.3564, CH08.1516
Poaceae	Eleusine coracana subsp. coracana	18	gene-QOZ80_1AG0020900, gene-QOZ80_1AG0023560 ... gene-QOZ80_1AG0023570, gene-QOZ80_1BG0070690, gene-QOZ80_1BG0074080, gene-QOZ80_1BG0074090, gene-QOZ80_1BG0074100, gene-QOZ80_5AG0365790, gene-QOZ80_5AG0389100, gene-QOZ80_5BG0413600, gene-QOZ80_5BG0435880, gene-QOZ80_7AG0567930, gene-QOZ80_7BG0599330, gene-QOZ80_8AG0629450, gene-QOZ80_8AG0634690, gene-QOZ80_8BG0657690, gene-QOZ80_8BG0657700, gene-QOZ80_8BG0663660
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.1HG0055060.1, HORVU.MOREX.r3.1HG0058320.2 ... HORVU.MOREX.r3.1HG0055150.1.CDS1, HORVU.MOREX.r3.1HG0055160.1.CDS1, HORVU.MOREX.r3.3HG0310240.1.CDS1, HORVU.MOREX.r3.5HG0485260.1.CDS1, HORVU.MOREX.r3.5HG0502080.1, HORVU.MOREX.r3.5HG0522060.1.CDS1, HORVU.MOREX.r3.6HG0565120.1, HORVU.MOREX.r3.6HG0565340.1.CDS1, HORVU.MOREX.r3.6HG0567020.1.CDS1, HORVU.MOREX.r3.7HG0635460.1.CDS1
Poaceae	Lolium multiflorum	20	gene-QYE76_001927, gene-QYE76_001928, gene-QYE76_012384 ... gene-QYE76_012387, gene-QYE76_012390, gene-QYE76_012417, gene-QYE76_012422, gene-QYE76_020647, gene-QYE76_028148, gene-QYE76_053642, gene-QYE76_053651, gene-QYE76_053653, gene-QYE76_053656, gene-QYE76_055607, gene-QYE76_057587, gene-QYE76_057613, gene-QYE76_058545, gene-QYE76_060211, gene-QYE76_060212, gene-QYE76_069599
Poaceae	Oryza coarctata	5	Oco01G014050, Oco02G014280, Oco02G014300, Oco03G006450 ... Oco04G006660
Poaceae	Oryza sativa	2	LOC_Os01g41950.1, LOC_Os01g41970.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G373100, gene-BS78_03G170300 ... gene-BS78_05G083500, gene-BS78_08G105400, gene-BS78_08G105600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106360, Pt_Chr0601009, Pt_Chr0700515, Pt_Chr0700517
Poaceae	Sporobolus alterniflorus	16	Chr02G016050, Chr02G016060, Chr02G016080, Chr05G017780 ... Chr05G017790, Chr06G015330, Chr06G015340, Chr08G010690, Chr0G001820, Chr17G013060, Chr18G010770, Chr24G007590, Chr24G007600, Chr28G006960, Chr29G006530, Chr29G006550
Poaceae	Thinopyrum elongatum	16	Tel1E01G351900, Tel1E01G352200, Tel1E01G374400 ... Tel3E01G677900, Tel4E01G495400, Tel4E01G627500, Tel5E01G377400, Tel5E01G543300, Tel5E01G543400, Tel5E01G543700, Tel5E01G716300, Tel6E01G152100, Tel6E01G284400, Tel6E01G285000, Tel6E01G294800, Tel7E01G742800
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG033420, gene_TRIDC1BG038760 ... gene_TRIDC2BG004830, gene_TRIDC4AG001240, gene_TRIDC4BG028860, gene_TRIDC5AG036820, gene_TRIDC5AG064990, gene_TRIDC5AG065000, gene_TRIDC6AG018170, gene_TRIDC6AG019180, gene_TRIDC6BG024040, gene_TRIDC6BG047890
Poaceae	Triticum aestivum	61	TraesCS1A02G204400.1, TraesCS1A02G204500.1 ... TraesCS1A02G221300.1, TraesCS1A02G381900.1.cds1, TraesCS1B02G218000.1, TraesCS1B02G218100.2, TraesCS1B02G218200.1, TraesCS1B02G234600.1, TraesCS1D02G207700.1, TraesCS1D02G207800.1.cds1, TraesCS1D02G207900.1.cds1, TraesCS1D02G222900.1, TraesCS1D02G389600.1.cds1, TraesCS1D02G447800.1, TraesCS2A02G039800.1.cds1, TraesCS2B02G052700.1.cds1, TraesCS2D02G038400.1.cds1, TraesCS3A02G115100.1.cds1, TraesCS3B02G042100.1.cds1, TraesCS3B02G463100.1.cds1, TraesCS3D02G421800.1.cds1, TraesCS4A02G009100.1, TraesCS4A02G484100.1.cds1, TraesCS4B02G388000.1.cds1, TraesCS4B02G389200.1.cds1, TraesCS4B02G389600.1, TraesCS5A02G232300.1.cds1, TraesCS5A02G341800.1, TraesCS5A02G453000.1.cds1, TraesCS5A02G553400.1.cds1, TraesCS5A02G553500.1, TraesCS5B02G230600.1, TraesCS5B02G340500.1, TraesCS5B02G341300.1, TraesCS5B02G462000.1, TraesCS5D02G235700.1, TraesCS5D02G346600.1, TraesCS5D02G346700.1, TraesCS5D02G363200.1, TraesCS5D02G463400.1.cds1, TraesCS5D02G463500.1.cds1, TraesCS5D02G463800.1.cds1, TraesCS6A02G134600.1.cds1, TraesCS6A02G134900.1.cds1, TraesCS6A02G140400.1.cds1, TraesCS6A02G421400.2, TraesCS6B02G163000.1.cds1, TraesCS6B02G168900.1.cds1, TraesCS6B02G445700.1, TraesCS6D02G123800.1.cds1, TraesCS6D02G124100.1.cds1, TraesCS6D02G128500.2.cds1, TraesCS6D02G403600.1, TraesCS7D02G078200.1.cds1, TraesCS7D02G078300.1, TraesCSU02G072300.1.cds1, TraesCSU02G123900.1.cds1, TraesCSU02G124000.1.cds1, TraesCSU02G124100.1.cds1, TraesCSU02G198400.1, TraesCSU02G221300.1
Poaceae	Zea mays	2	Zm00001eb042100_P001, Zm00001eb161470_P001
Poaceae	Zoysia japonica	3	nbis-gene-12552, nbis-gene-38416, nbis-gene-990
Poaceae	Zoysia macrostachya	3	Zma_g25778, Zma_g5174, Zma_g6460