HalophFGD

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Basic Information
Locus ID: Pt_Chr0106204
Species & Taxonomic ID: Puccinellia tenuiflora & 240906
Genome Assembly: GCA_012064385.1
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
Chr01 200925560 200926054 + Pt_Chr0106204
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.13 18,014.23 Da 55.94 79.82 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 17 53 3.2E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 15 82 1.14E-13 IPR036047
Gene3D G3DSA:1.20.1280.50 - 16 58 1.5E-7 -
SMART SM00256 fbox_2 17 59 1.0E-6 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 11 62 10.053852 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044400234.1 uncharacterized protein LOC123123720 [Triticum aestivum] 0
TrEMBL A0A453MFC2 F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 45 AH01.1625, AH01.3685, AH03.133, AH03.156, AH03.157, AH03.90 ...
AH08.1672, BH01.1077, BH01.1821, BH01.4038, BH03.116, BH03.118, BH03.155, BH03.157, BH03.159, BH03.192, BH03.197, BH03.594, BH04.1798, BH05.3426, BH06.1669, BH07.521, BH08.1721, BH09.2369, CH01.4306, CH03.1128, CH03.167, CH03.168, CH03.215, CH03.218, CH03.220, CH03.221, CH03.246, CH03.247, CH03.252, CH03.569, CH03.672, CH03.673, CH03.720, CH05.3865, CH06.1430, CH07.1197, CH07.1465, CH09.2515, Contig2334.2
Poaceae Eleusine coracana subsp. coracana 71 gene-QOZ80_3AG0244410, gene-QOZ80_3AG0247760 ...
gene-QOZ80_3AG0248790, gene-QOZ80_3BG0283750, gene-QOZ80_5AG0374940, gene-QOZ80_5AG0406490, gene-QOZ80_5AG0406520, gene-QOZ80_5BG0421280, gene-QOZ80_5BG0454460, gene-QOZ80_5BG0454510, gene-QOZ80_5BG0454540, gene-QOZ80_6AG0536340, gene-QOZ80_6BG0489620, gene-QOZ80_7AG0553100, gene-QOZ80_7AG0553110, gene-QOZ80_7AG0553510, gene-QOZ80_7AG0553540, gene-QOZ80_7AG0553550, gene-QOZ80_7AG0553620, gene-QOZ80_7AG0553640, gene-QOZ80_7AG0553670, gene-QOZ80_7AG0553700, gene-QOZ80_7AG0553740, gene-QOZ80_7AG0553750, gene-QOZ80_7AG0554000, gene-QOZ80_7AG0554010, gene-QOZ80_7AG0554030, gene-QOZ80_7AG0554060, gene-QOZ80_7AG0554110, gene-QOZ80_7AG0554120, gene-QOZ80_7AG0554130, gene-QOZ80_7AG0554150, gene-QOZ80_7AG0554280, gene-QOZ80_7AG0554300, gene-QOZ80_7AG0554310, gene-QOZ80_7AG0554400, gene-QOZ80_7AG0554410, gene-QOZ80_7AG0554420, gene-QOZ80_7AG0554430, gene-QOZ80_7AG0554440, gene-QOZ80_7AG0554450, gene-QOZ80_7AG0559250, gene-QOZ80_7AG0559260, gene-QOZ80_7BG0584150, gene-QOZ80_7BG0584550, gene-QOZ80_7BG0584630, gene-QOZ80_7BG0584640, gene-QOZ80_7BG0584690, gene-QOZ80_7BG0584730, gene-QOZ80_7BG0584750, gene-QOZ80_7BG0584800, gene-QOZ80_7BG0584990, gene-QOZ80_7BG0585040, gene-QOZ80_7BG0585050, gene-QOZ80_7BG0585110, gene-QOZ80_7BG0585210, gene-QOZ80_7BG0585230, gene-QOZ80_7BG0585250, gene-QOZ80_7BG0585350, gene-QOZ80_7BG0585360, gene-QOZ80_7BG0585370, gene-QOZ80_7BG0585380, gene-QOZ80_7BG0585480, gene-QOZ80_7BG0585490, gene-QOZ80_7BG0585500, gene-QOZ80_7BG0585510, gene-QOZ80_7BG0585520, gene-QOZ80_7BG0590480, gene-QOZ80_7BG0590510, gene-QOZ80_8AG0632090, gene-QOZ80_8BG0661060
Poaceae Hordeum vulgare 30 HORVU.MOREX.r3.1HG0072210.1, HORVU.MOREX.r3.1HG0072220.1 ...
HORVU.MOREX.r3.1HG0072230.1, HORVU.MOREX.r3.1HG0072240.1, HORVU.MOREX.r3.1HG0072250.1, HORVU.MOREX.r3.2HG0155180.1, HORVU.MOREX.r3.2HG0155460.1, HORVU.MOREX.r3.2HG0179930.1, HORVU.MOREX.r3.3HG0225620.1.CDS1, HORVU.MOREX.r3.3HG0239960.1, HORVU.MOREX.r3.4HG0346930.1, HORVU.MOREX.r3.4HG0346940.1, HORVU.MOREX.r3.4HG0352700.1.CDS1, HORVU.MOREX.r3.4HG0390260.1.CDS1, HORVU.MOREX.r3.5HG0528340.1.CDS1, HORVU.MOREX.r3.5HG0529090.1.CDS1, HORVU.MOREX.r3.5HG0531240.1, HORVU.MOREX.r3.5HG0531640.1, HORVU.MOREX.r3.5HG0534380.1, HORVU.MOREX.r3.5HG0534390.1, HORVU.MOREX.r3.5HG0534440.1, HORVU.MOREX.r3.5HG0534450.1, HORVU.MOREX.r3.5HG0534490.1, HORVU.MOREX.r3.5HG0534570.1, HORVU.MOREX.r3.6HG0551680.1, HORVU.MOREX.r3.6HG0551690.1.CDS1, HORVU.MOREX.r3.6HG0616640.1, HORVU.MOREX.r3.6HG0616680.1.CDS1, HORVU.MOREX.r3.7HG0678860.1.CDS1, HORVU.MOREX.r3.7HG0750370.1.CDS1
Poaceae Lolium multiflorum 55 gene-QYE76_001326, gene-QYE76_001384, gene-QYE76_001390 ...
gene-QYE76_008239, gene-QYE76_014217, gene-QYE76_014295, gene-QYE76_019155, gene-QYE76_019650, gene-QYE76_019657, gene-QYE76_019812, gene-QYE76_020776, gene-QYE76_021030, gene-QYE76_034007, gene-QYE76_035132, gene-QYE76_036012, gene-QYE76_036023, gene-QYE76_039090, gene-QYE76_041209, gene-QYE76_041898, gene-QYE76_041908, gene-QYE76_041911, gene-QYE76_041918, gene-QYE76_041966, gene-QYE76_041974, gene-QYE76_041975, gene-QYE76_041980, gene-QYE76_041981, gene-QYE76_041982, gene-QYE76_044930, gene-QYE76_047695, gene-QYE76_056768, gene-QYE76_058873, gene-QYE76_059589, gene-QYE76_059849, gene-QYE76_059852, gene-QYE76_059889, gene-QYE76_059891, gene-QYE76_059892, gene-QYE76_059893, gene-QYE76_059984, gene-QYE76_059987, gene-QYE76_059989, gene-QYE76_060081, gene-QYE76_060082, gene-QYE76_060255, gene-QYE76_060284, gene-QYE76_060323, gene-QYE76_060328, gene-QYE76_060432, gene-QYE76_060480, gene-QYE76_060531, gene-QYE76_060532, gene-QYE76_060545, gene-QYE76_064733, gene-QYE76_065993
Poaceae Oryza coarctata 13 Oco01G012580, Oco10G007090, Oco11G006530, Oco12G006640 ...
Oco13G000780, Oco14G000750, Oco14G006330, Oco15G005880, Oco15G006140, Oco16G005630, Oco16G005640, Oco16G005680, Oco20G000810
Poaceae Oryza sativa 17 LOC_Os01g37670.1, LOC_Os05g27550.1, LOC_Os06g13850.1 ...
LOC_Os06g13960.1, LOC_Os06g13990.1, LOC_Os07g02890.1, LOC_Os07g02910.1, LOC_Os07g02930.1, LOC_Os07g03090.1, LOC_Os07g03100.1, LOC_Os07g03110.1, LOC_Os07g04750.1, LOC_Os07g23900.1, LOC_Os08g20440.2, LOC_Os08g20480.1, LOC_Os08g20492.1, LOC_Os11g37340.1
Poaceae Paspalum vaginatum 43 gene-BS78_01G180800, gene-BS78_02G010400, gene-BS78_K036100 ...
gene-BS78_02G010800, gene-BS78_02G011300, gene-BS78_02G014400, gene-BS78_02G015500, gene-BS78_02G016400, gene-BS78_02G018700, gene-BS78_02G018800, gene-BS78_02G018900, gene-BS78_02G019000, gene-BS78_02G019100, gene-BS78_02G019200, gene-BS78_02G019300, gene-BS78_02G019400, gene-BS78_02G019500, gene-BS78_02G019800, gene-BS78_02G022400, gene-BS78_02G022500, gene-BS78_02G022800, gene-BS78_02G023100, gene-BS78_02G023500, gene-BS78_02G024100, gene-BS78_02G024500, gene-BS78_02G065500, gene-BS78_02G069900, gene-BS78_02G099400, gene-BS78_02G191900, gene-BS78_03G100200, gene-BS78_03G300800, gene-BS78_04G011000, gene-BS78_04G307200, gene-BS78_05G027300, gene-BS78_05G027400, gene-BS78_06G006700, gene-BS78_06G022400, gene-BS78_07G147800, gene-BS78_08G026400, gene-BS78_09G099200, gene-BS78_09G128700, gene-BS78_10G139900, gene-BS78_K052000
Poaceae Puccinellia tenuiflora 40 Pt_Chr0105578, Pt_Chr0105898, Pt_Chr0105909, Pt_Chr0105982 ...
Pt_Chr0106204, Pt_Chr0106227, Pt_Chr0106409, Pt_Chr0106410, Pt_Chr0106529, Pt_Chr0106535, Pt_Chr0106539, Pt_Chr0106553, Pt_Chr0106555, Pt_Chr0106557, Pt_Chr0106563, Pt_Chr0106564, Pt_Chr0106565, Pt_Chr0106569, Pt_Chr0106570, Pt_Chr0106580, Pt_Chr0106596, Pt_Chr0106597, Pt_Chr0107961, Pt_Chr0108199, Pt_Chr0201020, Pt_Chr0201037, Pt_Chr0206717, Pt_Chr0207136, Pt_Chr0301941, Pt_Chr0302195, Pt_Chr0303389, Pt_Chr0303390, Pt_Chr0303392, Pt_Chr0303393, Pt_Chr0303432, Pt_Chr0303440, Pt_Chr0400829, Pt_Chr0400864, Pt_Chr0703366, Pt_Chr0704418
Poaceae Sporobolus alterniflorus 23 Chr01G000530, Chr01G034330, Chr01G034980, Chr0G005110 ...
Chr0G005200, Chr12G004630, Chr12G005280, Chr18G001880, Chr18G001890, Chr19G014540, Chr19G018180, Chr19G018190, Chr19G018370, Chr19G018450, Chr19G018460, Chr19G018470, Chr19G018560, Chr20G005230, Chr22G015870, Chr24G001990, Chr24G002130, Chr24G002280, Chr29G005150
Poaceae Thinopyrum elongatum 32 Tel1E01G091000, Tel1E01G476200, Tel1E01G476300 ...
Tel2E01G472800, Tel2E01G472900, Tel2E01G473200, Tel2E01G627800, Tel2E01G823400, Tel4E01G023800, Tel4E01G159500, Tel4E01G473700, Tel4E01G474500, Tel5E01G757600, Tel5E01G780200, Tel5E01G780400, Tel5E01G780600, Tel5E01G781200, Tel5E01G781300, Tel5E01G782300, Tel5E01G809000, Tel5E01G815800, Tel5E01G817200, Tel5E01G817700, Tel5E01G846400, Tel5E01G848500, Tel5E01G848800, Tel5E01G849100, Tel6E01G136300, Tel6E01G136600, Tel6E01G156700, Tel6E01G189300, Tel6E01G560500
Poaceae Triticum dicoccoides 24 gene_TRIDC1AG038950, gene_TRIDC1BG015130 ...
gene_TRIDC1BG044190, gene_TRIDC2AG037730, gene_TRIDC2AG037830, gene_TRIDC2BG040130, gene_TRIDC2BG040140, gene_TRIDC2BG040240, gene_TRIDC2BG055300, gene_TRIDC2BG074060, gene_TRIDC4AG034230, gene_TRIDC4AG034240, gene_TRIDC4BG015590, gene_TRIDC4BG050570, gene_TRIDC5BG076200, gene_TRIDC5BG077830, gene_TRIDC6AG001150, gene_TRIDC6AG006840, gene_TRIDC6AG010230, gene_TRIDC6AG010240, gene_TRIDC6AG047320, gene_TRIDC6BG011390, gene_TRIDC6BG015250, gene_TRIDC6BG015310
Poaceae Triticum aestivum 119 TraesCS1A02G260600.1, TraesCS1A02G294400.1 ...
TraesCS1A02G294500.1, TraesCS1A02G294600.1, TraesCS1B02G104800.1, TraesCS1B02G271200.1, TraesCS1B02G304000.1.cds1, TraesCS1D02G260600.1, TraesCS1D02G296900.1, TraesCS1D02G297000.1.cds1, TraesCS1D02G297100.1, TraesCS1D02G377600.1, TraesCS2A02G265400.1, TraesCS2A02G265600.1, TraesCS2A02G358800.1, TraesCS2B02G276400.1, TraesCS2B02G276500.1, TraesCS2B02G276600.1.cds1, TraesCS2B02G277100.1, TraesCS2B02G378200.2, TraesCS2B02G512800.1, TraesCS2D02G258100.1, TraesCS2D02G259000.1, TraesCS2D02G357700.1, TraesCS2D02G486000.1, TraesCS2D02G486100.1, TraesCS4A02G215700.1, TraesCS4A02G215800.1, TraesCS4A02G331500.1, TraesCS4A02G331700.1, TraesCS4A02G332300.1, TraesCS4A02G332500.1, TraesCS4A02G332700.1, TraesCS4A02G332800.1.cds1, TraesCS4A02G332900.1.cds1, TraesCS4A02G333000.1, TraesCS4A02G347900.1, TraesCS4A02G348200.1, TraesCS4A02G350800.1, TraesCS4A02G350900.1, TraesCS4A02G351000.1.cds1, TraesCS4A02G351100.1.cds1, TraesCS4A02G351200.1.cds1, TraesCS4A02G351300.1.cds1, TraesCS4A02G351400.1.cds1, TraesCS4A02G359700.1, TraesCS4A02G366500.1.cds1, TraesCS4B02G100400.1, TraesCS4B02G100500.1, TraesCS4B02G295400.1, TraesCS4D02G097000.1, TraesCS4D02G097100.1, TraesCS5A02G051300.1.cds1, TraesCS5A02G487500.1, TraesCS5B02G079700.1.cds1, TraesCS5B02G505500.2, TraesCS5B02G505600.1.cds1, TraesCS5B02G505900.1.cds1, TraesCS5B02G506200.1.cds1, TraesCS5B02G506400.1, TraesCS5B02G506700.1, TraesCS5B02G510300.1.cds1, TraesCS5B02G510400.1.cds1, TraesCS5B02G512700.1, TraesCS5B02G522100.1, TraesCS5B02G522200.1, TraesCS5B02G522300.1.cds1, TraesCS5B02G524800.1, TraesCS5B02G524900.1.cds1, TraesCS5B02G525000.1, TraesCS5B02G525100.1, TraesCS5B02G525200.1, TraesCS5B02G525400.1, TraesCS5B02G525700.1, TraesCS5B02G525800.1, TraesCS5B02G546100.1, TraesCS5B02G546800.1, TraesCS5B02G547100.1.cds1, TraesCS5B02G547300.1, TraesCS5B02G553200.1.cds1, TraesCS5B02G553300.1.cds1, TraesCS5B02G553500.1, TraesCS5B02G553700.1, TraesCS5D02G062300.1, TraesCS5D02G086300.1.cds1, TraesCS5D02G086600.1.cds1, TraesCS5D02G506500.1.cds1, TraesCS5D02G506600.1.cds1, TraesCS5D02G521000.1, TraesCS5D02G523800.1, TraesCS5D02G523900.1, TraesCS5D02G524200.1, TraesCS5D02G524300.1, TraesCS5D02G524400.1, TraesCS5D02G524900.1.cds1, TraesCS5D02G539600.2, TraesCS5D02G539700.1.cds1, TraesCS5D02G539900.1, TraesCS5D02G540100.1, TraesCS5D02G541000.1, TraesCS5D02G541200.1, TraesCS5D02G541300.2, TraesCS5D02G541700.1, TraesCS6A02G010500.1, TraesCS6A02G063500.1, TraesCS6A02G083500.1, TraesCS6A02G083600.1, TraesCS6A02G314800.1, TraesCS6B02G073700.1, TraesCS6B02G085000.1.cds1, TraesCS6B02G085100.1, TraesCS6B02G113400.1, TraesCS6B02G119700.1.cds1, TraesCS6D02G061200.1, TraesCS6D02G077200.1, TraesCS6D02G294100.1, TraesCS6D02G397600.1, TraesCS7B02G077900.1, TraesCSU02G142000.1
Poaceae Zea mays 11 Zm00001eb028860_P002, Zm00001eb043870_P001 ...
Zm00001eb043880_P001, Zm00001eb200220_P001, Zm00001eb229920_P001, Zm00001eb298860_P001, Zm00001eb299040_P004, Zm00001eb299080_P002, Zm00001eb299160_P001, Zm00001eb302490_P001, Zm00001eb332480_P001
Poaceae Zoysia japonica 8 nbis-gene-26736, nbis-gene-32113, nbis-gene-35847 ...
nbis-gene-50406, nbis-gene-50415, nbis-gene-50420, nbis-gene-50422, nbis-gene-50453
Poaceae Zoysia macrostachya 7 Zma_g1468, Zma_g23046, Zma_g4699, Zma_g5910, Zma_g5913 ...
Zma_g5920, Zma_g6140
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