Basic Information
Locus ID:
Pt_Chr0106202
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 200909276 | 200922557 | - | Pt_Chr0106202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 181,558.69 Da | 45.02 | 79.79 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 289 | 327 | 1.81321E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 1040 | 1306 | 8.0E-31 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 37 | 101 | 5.9E-10 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 417 | 684 | 1.3E-42 | IPR000719 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 239 | 339 | 3.14E-8 | IPR009030 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 689 | 1.01E-73 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1022 | 1307 | 2.56E-54 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1368 | 1566 | 7.31E-12 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1114 | 1321 | 7.1E-37 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 239 | 337 | 1.2E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 715 | 5.1E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1438 | 1568 | 1.2E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1348 | 1434 | 1.8E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 389 | 492 | 5.5E-29 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1013 | 1113 | 1.2E-19 | - |
| SMART | SM00181 | egf_5 | 292 | 338 | 3.1 | IPR000742 |
| SMART | SM00181 | egf_5 | 239 | 288 | 43.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 289 | 338 | 2.3E-8 | IPR001881 |
| SMART | SM00220 | serkin_6 | 417 | 690 | 5.5E-36 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1040 | 1307 | 2.0E-13 | IPR000719 |
| SMART | SM00181 | egf_5 | 872 | 921 | 96.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1040 | 1307 | 26.195261 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 417 | 690 | 36.301071 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 423 | 446 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 289 | 322 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 538 | 550 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1046 | 1069 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1159 | 1171 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1559 | 1615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1571 | 1593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1594 | 1613 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_051177151.1 | wall-associated receptor kinase 2-like [Lolium perenne] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JCF1 | Protein kinase domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology