Basic Information
Locus ID:
Pt_Chr0105999
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 195533390 | 195556248 | - | Pt_Chr0105999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 108,528.88 Da | 49.92 | 94.16 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 617 | 691 | 1.1224E-11 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 33 | 111 | 1.23889E-14 | - |
| Pfam | PF07707 | BTB And C-terminal Kelch | 732 | 821 | 3.5E-5 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 35 | 125 | 2.1E-15 | IPR000210 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 144 | 243 | 9.9E-7 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 617 | 705 | 5.6E-13 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 37 | 125 | 8.37E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 617 | 705 | 1.02E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 603 | 738 | 5.5E-16 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 163 | 267 | 2.3E-8 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 739 | 848 | 3.8E-9 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 22 | 162 | 2.6E-18 | IPR011333 |
| SMART | SM00875 | BACK_2 | 142 | 245 | 2.5E-4 | IPR011705 |
| SMART | SM00225 | BTB_4 | 30 | 128 | 2.0E-11 | IPR000210 |
| SMART | SM00875 | BACK_2 | 511 | 612 | 1.2 | IPR011705 |
| SMART | SM00875 | BACK_2 | 722 | 825 | 0.032 | IPR011705 |
| SMART | SM00225 | BTB_4 | 610 | 708 | 2.0E-9 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 24 | 97 | 14.687265 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 607 | 677 | 11.957241 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_051228871.1 | BTB/POZ domain-containing protein POB1-like [Lolium perenne] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I6XMR3 | BTB domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105999, Pt_Chr0108219 |