Basic Information
Locus ID:
Pt_Chr0105997
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 195465353 | 195468750 | + | Pt_Chr0105997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 52,005.10 Da | 47.58 | 90.90 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 78 | 145 | 1.56886E-11 | - |
| Pfam | PF07707 | BTB And C-terminal Kelch | 187 | 277 | 4.0E-6 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 71 | 158 | 7.2E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 71 | 159 | 5.76E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 24 | 203 | 1.1E-18 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 204 | 301 | 1.2E-10 | - |
| SMART | SM00875 | BACK_2 | 176 | 279 | 6.1E-4 | IPR011705 |
| SMART | SM00225 | BTB_4 | 37 | 162 | 2.1E-10 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 71 | 131 | 13.611801 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_051177247.1 | BTB/POZ domain-containing protein POB1-like isoform X1 [Lolium perenne] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | M8B568 | Kelch-like protein 17 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_060469, gene-QYE76_060470, gene-QYE76_060471 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105997 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G694700, Tel5E01G787100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG076220 |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G510600.1, TraesCS5D02G510300.3 |