Basic Information
Locus ID:
Pt_Chr0105824
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 191420575 | 191424073 | - | Pt_Chr0105824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 77,325.39 Da | 69.55 | 61.26 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 639 | 679 | 1.48169E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 637 | 684 | 5.2E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 639 | 685 | 2.79E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 622 | 690 | 7.4E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 640 | 679 | 10.586141 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 524 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051183854.1 | uncharacterized protein LOC127297571 [Lolium perenne] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology