Basic Information
Locus ID:
Pt_Chr0105705
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 188773144 | 188776175 | - | Pt_Chr0105705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 57,828.92 Da | 57.14 | 53.10 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 480 | 511 | 5.1E-8 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 382 | 463 | 1.5E-16 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 382 | 464 | 3.1E-23 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 309 | - | - |
| Coils | Coil | Coil | 371 | 408 | - | - |
| Coils | Coil | Coil | 416 | 445 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_047092895.1 | uncharacterized protein LOC124704669 [Lolium rigidum] | 0 |
| TrEMBL | I1GLR6 | PAPA-1 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100842627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology