Basic Information
Locus ID:
Pt_Chr0105691
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 188510239 | 188514319 | - | Pt_Chr0105691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 60,014.73 Da | 39.01 | 79.33 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 61 | 317 | 1.56259E-132 | - |
| CDD | cd15898 | EFh_PI-PLC | 366 | 499 | 8.40359E-18 | - |
| Pfam | PF00069 | Protein kinase domain | 64 | 318 | 4.4E-73 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 378 | 427 | 3.8E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 436 | 500 | 2.4E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 342 | 512 | 3.87E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 62 | 327 | 1.89E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 62 | 145 | 7.6E-27 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 502 | 1.1E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 146 | 326 | 7.0E-59 | - |
| SMART | SM00054 | efh_1 | 401 | 429 | 0.072 | IPR002048 |
| SMART | SM00054 | efh_1 | 474 | 502 | 5.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 437 | 465 | 0.0028 | IPR002048 |
| SMART | SM00220 | serkin_6 | 60 | 318 | 6.3E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 365 | 393 | 3.3E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 361 | 396 | 15.629221 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 470 | 505 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 433 | 468 | 13.313904 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 397 | 432 | 9.045907 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 60 | 318 | 47.749611 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 410 | 422 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 446 | 458 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 374 | 386 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 66 | 89 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 483 | 495 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 180 | 192 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12480.1 | calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | 0 |
| RefSeq | XP_010227954.1 | calcium-dependent protein kinase 8 [Brachypodium distachyon] | 0 |
| Q75GE8 | Calcium-dependent protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK8 PE=2 SV=1 | 0 | |
| TrEMBL | I1GLT7 | Calcium-dependent protein kinase 30 OS=Brachypodium distachyon OX=15368 GN=100845939 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology