halophFGD

Basic Information

Locus ID: Pt_Chr0105676

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: In Between Ring fingers

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	188306670	188307387	+	Pt_Chr0105676

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.97	22,070.22 Da	49.01	45.95	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01485	IBR domain, a half RING-finger domain	80	131	2.6E-10	IPR002867
Pfam	PF01485	IBR domain, a half RING-finger domain	148	198	3.7E-10	IPR002867
SUPERFAMILY	SSF57850	RING/U-box	141	198	9.71E-16	-
SUPERFAMILY	SSF57850	RING/U-box	16	75	1.92E-7	-
SUPERFAMILY	SSF57850	RING/U-box	76	137	3.94E-7	-
Gene3D	G3DSA:1.20.120.1750	-	129	200	1.1E-15	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	79	7.9E-13	IPR013083
SMART	SM00647	ibrneu5	66	131	4.4E-11	IPR002867
SMART	SM00647	ibrneu5	132	198	4.6E-7	IPR002867
ProSiteProfiles	PS51873	TRIAD supradomain profile.	1	200	24.607224	IPR044066

KEGG Pathway

KO Term:

K11975 (E3 ubiquitin-protein ligase RNF144 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14250.1	RING/U-box superfamily protein.
RefSeq	XP_047046886.1	E3 ubiquitin-protein ligase RSL1-like [Lolium rigidum]
Swiss-Prot	Q9LVW9	Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI4 PE=5 SV=2
TrEMBL	A0A3B6PIB5	RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13440, jg13441, jg26189, jg30320, jg32838, jg6163
Aizoaceae	Mesembryanthemum crystallinum	7	gene_14931, gene_15810, gene_6679, gene_6680, gene_6681 ... gene_9238, gene_9376
Amaranthaceae	Atriplex hortensis	6	Ah014991, Ah028708, Ah028709, Ah028710, Ah028711, Ah031359
Amaranthaceae	Beta vulgaris	3	BVRB_7g169260, BVRB_7g169270, BVRB_8g191110
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1974, Sbi_jg1975, Sbi_jg24737, Sbi_jg34533, Sbi_jg8599 ... Sbi_jg34535
Amaranthaceae	Salicornia europaea	4	Seu_jg20007, Seu_jg2795, Seu_jg2796, Seu_jg2797
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002771, GOSA_00011617, GOSA_00022326
Amaranthaceae	Suaeda glauca	8	Sgl42712, Sgl47448, Sgl73390, Sgl73391, Sgl73392, Sgl76912 ... Sgl76913, Sgl76914
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000005373, gene:ENSEOMG00000005527 ... gene:ENSEOMG00000009366, gene:ENSEOMG00000010127, gene:ENSEOMG00000034874, gene:ENSEOMG00000038120, gene:ENSEOMG00000040060, gene:ENSEOMG00000046774
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.7BG0024550, CQ.Regalona.r1.8AG0016830 ... CQ.Regalona.r1.8BG0017970, CQ.Regalona.r1.9BG0006820, CQ.Regalona.r1.9BG0006830
Anacardiaceae	Pistacia vera	15	pistato.v30120240, pistato.v30120250, pistato.v30130840 ... pistato.v30208860, pistato.v30208870, pistato.v30211070, pistato.v30211080, pistato.v30211110, pistato.v30211120, pistato.v30245810, pistato.v30245820, pistato.v30245840, pistato.v30245850, pistato.v30245870, pistato.v30245880
Apiaceae	Apium graveolens	15	Ag10G00194, Ag10G01383, Ag10G01388, Ag10G01389, Ag10G02831 ... Ag10G02832, Ag11G05060, Ag4G00189, Ag8G01653, Ag9G00085, Ag9G00086, Ag9G00087, Ag9G01033, Ag9G02483, Ag9G02484
Arecaceae	Cocos nucifera	4	COCNU_03G005070, COCNU_03G005080, COCNU_03G005090 ... COCNU_08G003100
Arecaceae	Phoenix dactylifera	2	gene-LOC103712589, gene-LOC103712610
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.2651.V1.1, AsparagusV1_09.356.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G33614, Ftri17G06314, Ftri3G05052, Ftri4G24233
Brassicaceae	Arabidopsis thaliana	2	AT3G14250.1, AT3G53690.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10000966m.g.v1.0, Thhalv10021941m.g.v1.0 ... Thhalv10021980m.g.v1.0, Thhalv10022329m.g.v1.0, Thhalv10022375m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g12540.v2.2, Sp4g07320.v2.2, Sp5g15900.v2.2
Brassicaceae	Brassica nigra	6	BniB01g050820.2N, BniB01g055750.2N, BniB02g025650.2N ... BniB05g043700.2N, BniB05g066360.2N, BniB07g027600.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0654
Casuarinaceae	Casuarina glauca	1	Cgl05G0668
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno08g04540, gene.Cymno09g01760, gene.Cymno11g09690
Dunaliellaceae	Dunaliella salina	2	Dusal.0494s00012.v1.0, Dusal.4315s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g04560, gene.Thate04g14660, gene.Thate09g20080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3363
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.629, evm.TU.LG01.632, evm.TU.LG07.768
Plantaginaceae	Plantago ovata	21	Pov_00000652, Pov_00002112, Pov_00003969, Pov_00003970 ... Pov_00007470, Pov_00007473, Pov_00015790, Pov_00020076, Pov_00020077, Pov_00020078, Pov_00020079, Pov_00020080, Pov_00020081, Pov_00022907, Pov_00032485, Pov_00032496, Pov_00037130, Pov_00037132, Pov_00037134, Pov_00041656, Pov_00041657
Plumbaginaceae	Limonium bicolor	5	Lb2G11297, Lb3G16847, Lb3G18822, Lb4G21992, Lb4G24088
Poaceae	Echinochloa crus-galli	20	AH03.1936, AH03.1937, AH03.1938, AH03.1939, AH08.1738 ... AH08.1739, AH08.1740, BH03.1994, BH03.1995, BH03.1997, BH03.1998, BH08.1784, BH08.1785, BH08.1786, CH03.2272, CH03.2273, CH03.2274, CH08.1941, CH08.1944, CH08.34
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_6AG0535310, gene-QOZ80_6AG0535330 ... gene-QOZ80_6BG0488560, gene-QOZ80_6BG0488580, gene-QOZ80_6BG0488600, gene-QOZ80_6BG0488610, gene-QOZ80_6BG0489390, gene-QOZ80_8AG0632840, gene-QOZ80_8AG0632850, gene-QOZ80_8BG0661880, gene-QOZ80_8BG0661900, gene-QOZ80_8BG0661910
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0207090.1, HORVU.MOREX.r3.2HG0211990.1 ... HORVU.MOREX.r3.2HG0212000.1, HORVU.MOREX.r3.5HG0483860.1, HORVU.MOREX.r3.5HG0483880.1, HORVU.MOREX.r3.5HG0483890.1, HORVU.MOREX.r3.6HG0557260.1, HORVU.MOREX.r3.6HG0601390.1
Poaceae	Lolium multiflorum	14	gene-QYE76_005156, gene-QYE76_005157, gene-QYE76_005158 ... gene-QYE76_005161, gene-QYE76_005169, gene-QYE76_005171, gene-QYE76_005172, gene-QYE76_005173, gene-QYE76_005174, gene-QYE76_008532, gene-QYE76_039900, gene-QYE76_053888, gene-QYE76_053890, gene-QYE76_053895
Poaceae	Oryza coarctata	9	Oco15G013440, Oco16G009100, Oco17G005000, Oco17G005010 ... Oco17G005020, Oco18G002450, Oco18G005030, Oco18G005040, Oco18G005050
Poaceae	Oryza sativa	6	LOC_Os08g35060.1, LOC_Os08g35070.1, LOC_Os09g11170.1 ... LOC_Os09g25190.1, LOC_Os09g25220.1, LOC_Os09g25260.1
Poaceae	Paspalum vaginatum	14	gene-BS78_02G184400, gene-BS78_02G184500 ... gene-BS78_05G244200, gene-BS78_05G244300, gene-BS78_05G244400, gene-BS78_05G244500, gene-BS78_05G244600, gene-BS78_05G245300, gene-BS78_05G245400, gene-BS78_05G245500, gene-BS78_05G246400, gene-BS78_07G154400, gene-BS78_07G154500, gene-BS78_07G154600
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0105651, Pt_Chr0105676, Pt_Chr0500999, Pt_Chr0603376 ... Pt_Chr0603417, Pt_Chr0702172
Poaceae	Sporobolus alterniflorus	11	Chr10G009850, Chr10G009860, Chr10G009870, Chr14G014070 ... Chr14G014080, Chr14G014090, Chr16G014760, Chr17G014150, Chr17G014160, Chr21G013130, Chr21G013140
Poaceae	Thinopyrum elongatum	16	Tel1E01G033700, Tel2E01G259200, Tel2E01G341000 ... Tel2E01G347500, Tel2E01G896600, Tel2E01G897100, Tel2E01G931200, Tel2E01G932300, Tel5E01G367300, Tel5E01G367400, Tel5E01G367500, Tel5E01G367600, Tel5E01G367700, Tel5E01G651200, Tel6E01G243500, Tel6E01G465300
Poaceae	Triticum dicoccoides	20	gene_TRIDC2AG022810, gene_TRIDC2AG031140 ... gene_TRIDC2AG073860, gene_TRIDC2AG076290, gene_TRIDC2BG026490, gene_TRIDC2BG026500, gene_TRIDC2BG026820, gene_TRIDC2BG026830, gene_TRIDC2BG080620, gene_TRIDC2BG083490, gene_TRIDC5AG035910, gene_TRIDC5AG035940, gene_TRIDC5AG059980, gene_TRIDC5BG037770, gene_TRIDC5BG037780, gene_TRIDC5BG037790, gene_TRIDC5BG064150, gene_TRIDC6AG038290, gene_TRIDC6BG019850, gene_TRIDC6BG045290
Poaceae	Triticum aestivum	36	TraesCS2A02G178500.1, TraesCS2A02G526800.2 ... TraesCS2A02G527000.1, TraesCS2A02G545900.1, TraesCS2A02G546000.1, TraesCS2B02G144500.1, TraesCS2B02G203600.1, TraesCS2B02G205500.1, TraesCS2B02G557100.1, TraesCS2B02G557600.1, TraesCS2B02G576800.1, TraesCS2B02G577000.1, TraesCS2D02G125100.1, TraesCS2D02G184500.1, TraesCS2D02G184700.1, TraesCS2D02G187100.1, TraesCS2D02G529500.1, TraesCS2D02G529800.1, TraesCS2D02G547100.1, TraesCS2D02G547300.1, TraesCS5A02G224400.1, TraesCS5A02G224700.1, TraesCS5A02G224900.1, TraesCS5B02G223200.1, TraesCS5B02G223300.1.cds1, TraesCS5B02G223400.1, TraesCS5B02G223500.1, TraesCS5D02G231800.1, TraesCS5D02G231900.1, TraesCS5D02G232000.1, TraesCS5D02G232100.1.cds1, TraesCS5D02G423000.1, TraesCS6A02G248600.1, TraesCS6B02G138600.1, TraesCS6D02G230700.1, TraesCS7D02G415800.1
Poaceae	Zea mays	4	Zm00001eb177170_P001, Zm00001eb177180_P001 ... Zm00001eb312930_P001, Zm00001eb312940_P002
Poaceae	Zoysia japonica	8	nbis-gene-17101, nbis-gene-20052, nbis-gene-30810 ... nbis-gene-56692, nbis-gene-57566, nbis-gene-57787, nbis-gene-58064, nbis-gene-7930
Poaceae	Zoysia macrostachya	3	Zma_g21128, Zma_g24155, Zma_g32406
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1141, evm.TU.LG03.169, evm.TU.LG03.170 ... evm.TU.LG07.976, evm.TU.LG12.1547, evm.TU.LG15.898, evm.TU.LG15.899, evm.TU.LG19.139, evm.TU.LG24.376
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g08480, gene.Posoc08g03420, gene.Posoc08g03470
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.613, evm.TU.Scaffold_10_RagTag.614 ... evm.TU.Scaffold_1_RagTag.1154, evm.TU.Scaffold_3_RagTag.1523, evm.TU.Scaffold_3_RagTag.1524, evm.TU.Scaffold_4_RagTag.1060, evm.TU.Scaffold_4_RagTag.1061, evm.TU.Scaffold_6_RagTag.1127
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13875, nbisL1-mrna-15528, nbisL1-mrna-1835 ... nbisL1-mrna-1837, nbisL1-mrna-1838, nbisL1-mrna-25831, nbisL1-mrna-25832, nbisL1-mrna-6464, nbisL1-mrna-6465, nbisL1-mrna-6467
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12028, nbisL1-mrna-1715, nbisL1-mrna-18223
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-1361, nbisL1-mrna-1362, nbisL1-mrna-2741 ... nbisL1-mrna-4266, nbisL1-mrna-4267, nbisL1-mrna-973
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000008l.253, add.evm.TU.utg000016l.345 ... add.evm.TU.utg000019l.136, evm.TU.utg000008l.684, evm.TU.utg000011l.720, evm.TU.utg000016l.812
Rhizophoraceae	Kandelia obovata	3	Maker00000666, Maker00000942, Maker00016632
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10996, nbisL1-mrna-10997, nbisL1-mrna-13580 ... nbisL1-mrna-17520, nbisL1-mrna-18308, nbisL1-mrna-2040, nbisL1-mrna-23140
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-12894, nbisL1-mrna-13351, nbisL1-mrna-13352 ... nbisL1-mrna-4125, nbisL1-mrna-9384, nbisL1-mrna-9385
Salicaceae	Populus euphratica	7	populus_peu04158, populus_peu05239, populus_peu11654 ... populus_peu16727, populus_peu18787, populus_peu18882, populus_peu34987
Solanaceae	Lycium barbarum	16	gene-LOC132599209, gene-LOC132599210, gene-LOC132599211 ... gene-LOC132599212, gene-LOC132599219, gene-LOC132617466, gene-LOC132617860, gene-LOC132618430, gene-LOC132618955, gene-LOC132620254, gene-LOC132627687, gene-LOC132632931, gene-LOC132633112, gene-LOC132634315, gene-LOC132634391, gene-LOC132644851
Solanaceae	Solanum chilense	12	SOLCI001685700, SOLCI002149200, SOLCI002201500 ... SOLCI002734500, SOLCI002917000, SOLCI003767000, SOLCI005026200, SOLCI005982000, SOLCI006233400, SOLCI006233500, SOLCI006573000, SOLCI007522200
Solanaceae	Solanum pennellii	8	gene-LOC107012667, gene-LOC107012777, gene-LOC107014597 ... gene-LOC107016255, gene-LOC107023845, gene-LOC107026339, gene-LOC107026345, gene-LOC114076354
Tamaricaceae	Reaumuria soongarica	6	STRG.23101_chr05_+, STRG.30832_chr10_+, STRG.7861_chr04_- ... gene_13794, gene_2581, gene_2582
Tamaricaceae	Tamarix chinensis	4	TC01G2340, TC05G0586, TC05G0589, TC06G2098
Zosteraceae	Zostera marina	2	Zosma01g09990.v3.1, Zosma04g09030.v3.1