Basic Information
Locus ID:
Pt_Chr0105495
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 183060643 | 183066231 | + | Pt_Chr0105495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 43,511.10 Da | 56.95 | 73.92 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 58 | 98 | 2.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 104 | 4.01E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 271 | 362 | 4.5E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 144 | 7.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 58 | 98 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 58 | 99 | 11.545086 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 74 | 83 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 226 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.1 | DREB2A-interacting protein 2. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_051177719.1 | E3 ubiquitin protein ligase DRIP2-like [Lolium perenne] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LV36 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37836 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.225, BH01.522, CH01.378 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0212400, gene-QOZ80_3BG0257600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0519820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061221 |
| Poaceae | Oryza coarctata | 2 | Oco05G026120, Oco06G027030 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g58390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G049800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105412, Pt_Chr0105495 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G002750, Chr12G034570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G693400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG063560, gene_TRIDC5BG068120 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G443000.1, TraesCS5B02G447600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb060990_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16475 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2575 |