Basic Information
Locus ID:
Pt_Chr0105197
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 175028097 | 175033383 | - | Pt_Chr0105197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 79,020.21 Da | 38.79 | 85.20 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 66 | 1.8E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 432 | 700 | 1.8E-38 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 115 | 172 | 8.2E-11 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 245 | 9.23E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 404 | 701 | 3.96E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 392 | 507 | 1.4E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 261 | 2.6E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 508 | 711 | 2.0E-55 | - |
| SMART | SM00369 | LRR_typ_2 | 161 | 184 | 9.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 116 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 160 | 33.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 430 | 704 | 33.870026 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 436 | 459 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_051214671.1 | protein STRUBBELIG-RECEPTOR FAMILY 7-like [Lolium perenne] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KER0 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology