Basic Information
Locus ID:
Pt_Chr0105035
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 168612269 | 168616421 | - | Pt_Chr0105035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 53,418.76 Da | 57.43 | 69.60 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 246 | 271 | 1.1E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 285 | 319 | 2.71E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 243 | 270 | 2.67E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 238 | 274 | 2.3E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 282 | 320 | 2.0E-11 | - |
| SMART | SM00547 | zf_4 | 292 | 316 | 0.0031 | IPR001876 |
| SMART | SM00547 | zf_4 | 248 | 272 | 2.0E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 290 | 319 | 9.201654 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 246 | 275 | 9.913063 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 294 | 313 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 250 | 269 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 444 | - | - |
| Coils | Coil | Coil | 203 | 223 | - | - |
| Coils | Coil | Coil | 413 | 437 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_047085801.1 | uncharacterized protein LOC124697222 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6JCX4 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology