Basic Information
Locus ID:
Pt_Chr0104993
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 167680684 | 167684559 | + | Pt_Chr0104993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 101,674.23 Da | 37.78 | 87.26 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 607 | 879 | 6.4129E-98 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 604 | 874 | 2.9E-48 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 344 | 377 | 0.24 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 0.001 | IPR013210 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 405 | 446 | 1.2E-6 | IPR025875 |
| SUPERFAMILY | SSF52058 | L domain-like | 72 | 452 | 9.69E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 589 | 899 | 1.27E-79 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 322 | 5.3E-68 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 679 | 897 | 8.6E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 561 | 678 | 2.1E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 340 | 464 | 9.1E-32 | IPR032675 |
| SMART | SM00220 | serkin_6 | 601 | 887 | 3.7E-46 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 126 | 149 | 0.002 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 601 | 882 | 40.71088 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 607 | 629 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 726 | 738 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 956 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 491 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_003572876.1 | receptor protein kinase TMK1 [Brachypodium distachyon] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | I1ID77 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100844184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology