Basic Information
Locus ID:
Pt_Chr0104700
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeats (3 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 158934456 | 158968549 | - | Pt_Chr0104700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 209,067.34 Da | 39.06 | 77.65 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1590 | 1666 | 1.4E-11 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 344 | 422 | 2.0E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1092 | 1178 | 3.1E-13 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 817 | 891 | 2.5E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1196 | 1276 | 2.9E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 224 | 312 | 2.4E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 725 | 785 | 2.7E-11 | IPR020683 |
| Pfam | PF13181 | Tetratricopeptide repeat | 1029 | 1061 | 0.0014 | IPR019734 |
| Pfam | PF13181 | Tetratricopeptide repeat | 1384 | 1416 | 0.11 | IPR019734 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1694 | 1765 | 3.8E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 643 | 722 | 5.0E-9 | IPR020683 |
| Pfam | PF13432 | Tetratricopeptide repeat | 1840 | 1887 | 0.0081 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 653 | 890 | 1.17E-48 | IPR036770 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 1535 | 1765 | 1.83E-44 | IPR036770 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 1064 | 1276 | 1.24E-42 | IPR036770 |
| SUPERFAMILY | SSF48452 | TPR-like | 963 | 1419 | 1.3E-45 | IPR011990 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 179 | 417 | 1.76E-48 | IPR036770 |
| SUPERFAMILY | SSF48452 | TPR-like | 1830 | 1942 | 7.39E-36 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 454 | 563 | 5.6E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.20 | - | 330 | 431 | 3.7E-13 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1197 | 1290 | 1.0E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 114 | 256 | 3.3E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1496 | 1824 | 5.4E-53 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 603 | 950 | 2.1E-58 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1071 | 1196 | 4.5E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1312 | 1425 | 8.9E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1828 | 1941 | 3.7E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 958 | 1070 | 9.9E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 452 | 566 | 4.0E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.20 | - | 257 | 329 | 3.4E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 395 | 424 | 870.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1744 | 1773 | 1300.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1084 | 1113 | 5.8 | IPR002110 |
| SMART | SM00248 | ANK_2a | 361 | 390 | 11.0 | IPR002110 |
| SMART | SM00028 | tpr_5 | 488 | 521 | 5.7 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1383 | 1416 | 0.003 | IPR019734 |
| SMART | SM00028 | tpr_5 | 994 | 1027 | 3.3 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1315 | 1348 | 350.0 | IPR019734 |
| SMART | SM00248 | ANK_2a | 251 | 280 | 1.8E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 182 | 212 | 1.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 218 | 247 | 2.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1149 | 1178 | 0.017 | IPR002110 |
| SMART | SM00248 | ANK_2a | 834 | 863 | 2.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1573 | 1602 | 3.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1537 | 1567 | 0.029 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1671 | 1708 | 2900.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 655 | 685 | 0.86 | IPR002110 |
| SMART | SM00248 | ANK_2a | 691 | 720 | 2.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1638 | 1667 | 1.2 | IPR002110 |
| SMART | SM00248 | ANK_2a | 724 | 753 | 1.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1606 | 1635 | 4.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 756 | 785 | 0.0061 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1710 | 1739 | 6.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1182 | 1219 | 28.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1255 | 1284 | 720.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1117 | 1146 | 2.5E-4 | IPR002110 |
| SMART | SM00028 | tpr_5 | 960 | 993 | 130.0 | IPR019734 |
| SMART | SM00248 | ANK_2a | 283 | 312 | 8.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 316 | 359 | 270.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1221 | 1250 | 0.0015 | IPR002110 |
| SMART | SM00248 | ANK_2a | 794 | 832 | 380.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 868 | 897 | 710.0 | IPR002110 |
| SMART | SM00028 | tpr_5 | 522 | 555 | 0.0045 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1864 | 1897 | 6.8 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1898 | 1931 | 0.37 | IPR019734 |
| SMART | SM00028 | tpr_5 | 454 | 487 | 96.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1028 | 1061 | 6.2E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1349 | 1382 | 1.5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1830 | 1863 | 5.0 | IPR019734 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1573 | 1605 | 11.86141 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1084 | 1116 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 756 | 784 | 10.895672 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 1383 | 1416 | 9.7944 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 1830 | 1863 | 9.9124 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 1028 | 1061 | 11.003901 | IPR019734 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1084 | 1115 | 8.720098 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 960 | 993 | 8.4374 | IPR019734 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 283 | 315 | 11.46076 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1710 | 1742 | 10.04513 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1221 | 1253 | 9.569101 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1149 | 1177 | 9.436445 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1606 | 1635 | 11.797739 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 724 | 755 | 12.726336 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1606 | 1638 | 12.44903 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 691 | 723 | 11.8347 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1573 | 1605 | 10.4977 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 724 | 756 | 14.10505 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 834 | 863 | 8.879286 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 1898 | 1931 | 8.0244 | IPR019734 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 218 | 250 | 11.94154 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 218 | 249 | 11.054859 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1642 | 1664 | 8.65621 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 283 | 311 | 11.346704 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1221 | 1253 | 10.926559 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 756 | 788 | 11.00669 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1117 | 1146 | 12.03652 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 454 | 487 | 8.6439 | IPR019734 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 834 | 866 | 9.27054 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 251 | 283 | 14.719379 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1149 | 1181 | 10.4992 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1710 | 1739 | 8.74663 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 522 | 555 | 9.8534 | IPR019734 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1642 | 1664 | 8.640504 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 691 | 722 | 10.948734 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 251 | 282 | 13.336557 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1117 | 1149 | 12.50245 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 1206 | 1220 | 1.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 725 | 740 | 1.4E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1428 | 1447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 958 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04710.1 | ankyrin repeat family protein. | 0 |
| RefSeq | XP_051207079.1 | uncharacterized protein LOC127322166 [Lolium perenne] | 0 |
| F8RP11 | Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KHF7 | ANK_REP_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1475, jg35382 |
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_10113, gene_18415, gene_19340, gene_19341, gene_19342 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah000253, Ah000255, Ah006237, Ah015373, Ah026151, Ah037550 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g083870, BVRB_5g120420, BVRB_6g137150 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg16765, Sbi_jg31543, Sbi_jg57757, Sbi_jg57758 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg22992, Seu_jg25400, Seu_jg3587, Seu_jg3588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00008163, GOSA_00019498, GOSA_00019499 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24903, Sgl30049, Sgl54319, Sgl59664 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006664, gene:ENSEOMG00000011535 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4AG0011120, CQ.Regalona.r1.4BG0011370 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30184200 |
| Apiaceae | Apium graveolens | 1 | Ag6G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002080 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716575, gene-LOC113461912, gene-LOC120105337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2016.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G34029 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020698m.g.v1.0, Thhalv10021827m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g033370.2N, BniB07g062080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01410 |
| Dunaliellaceae | Dunaliella salina | 7 | Dusal.0011s00023.v1.0, Dusal.0052s00030.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7871 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2245 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00007891, Pov_00007892, Pov_00007894, Pov_00007897 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06950 |
| Poaceae | Echinochloa crus-galli | 69 | AH01.1043, AH01.1044, AH01.1045, AH01.1047, AH01.1236 ... |
| Poaceae | Eleusine coracana subsp. coracana | 34 | gene-QOZ80_2AG0114770, gene-QOZ80_2AG0117870 ... |
| Poaceae | Hordeum vulgare | 23 | HORVU.MOREX.r3.1HG0001130.1, HORVU.MOREX.r3.1HG0074060.1 ... |
| Poaceae | Lolium multiflorum | 82 | gene-QYE76_000174, gene-QYE76_000175, gene-QYE76_000212 ... |
| Poaceae | Oryza coarctata | 19 | Oco02G002900, Oco02G003120, Oco03G010420, Oco03G010440 ... |
| Poaceae | Oryza sativa | 26 | LOC_Os01g07640.1, LOC_Os01g07980.1, LOC_Os01g08000.2 ... |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G125500, gene-BS78_01G125600, gene-BS78_K147400 ... |
| Poaceae | Puccinellia tenuiflora | 62 | Pt_Chr0100997, Pt_Chr0102045, Pt_Chr0103021, Pt_Chr0103022 ... |
| Poaceae | Sporobolus alterniflorus | 37 | Chr01G008300, Chr01G009560, Chr01G014200, Chr02G015620 ... |
| Poaceae | Thinopyrum elongatum | 45 | Tel1E01G021800, Tel1E01G087300, Tel1E01G103100 ... |
| Poaceae | Triticum dicoccoides | 83 | gene_TRIDC1AG000630, gene_TRIDC1AG004720 ... |
| Poaceae | Triticum aestivum | 137 | TraesCS1A02G009000.3, TraesCS1A02G043400.1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb031110_P003, Zm00001eb032790_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30498, nbis-gene-48843, nbis-gene-52515 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19414, Zma_g26077, Zma_g26238 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2875, evm.TU.LG01.2876, evm.TU.LG02.1155 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1937 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3354 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-66 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13784 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005193 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16253 |
| Salicaceae | Populus euphratica | 3 | populus_peu13592, populus_peu15136, populus_peu15937 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132645306, gene-LOC132645307 |
| Solanaceae | Solanum chilense | 1 | SOLCI001390300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008320, gene-LOC107008474, gene-LOC114073919 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5986 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3479 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01570.v3.1 |