Basic Information
Locus ID:
Pt_Chr0104682
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 158195571 | 158197826 | + | Pt_Chr0104682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 10,094.30 Da | 32.99 | 80.64 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 36 | 68 | 4.59432E-12 | - |
| Pfam | PF12906 | RING-variant domain | 36 | 70 | 1.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 73 | 5.83E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 81 | 1.2E-12 | IPR013083 |
| SMART | SM00744 | ringv_2 | 35 | 75 | 4.4E-5 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 28 | 87 | 13.29415 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_047087269.1 | uncharacterized protein LOC124698925 [Lolium rigidum] | 0 |
| TrEMBL | A0A453HWE8 | RING-CH-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology