Basic Information
Locus ID:
Pt_Chr0104637
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 156721771 | 156726893 | - | Pt_Chr0104637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 82,517.77 Da | 60.40 | 54.07 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 264 | 305 | 1.00184E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 3.0E-22 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 172 | 192 | 3.6E-8 | IPR025829 |
| Pfam | PF13696 | Zinc knuckle | 198 | 218 | 2.0E-6 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 328 | 7.51E-11 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 218 | 2.62E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 168 | 195 | 3.2E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 1.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 342 | 1.2E-11 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 196 | 249 | 2.1E-10 | - |
| SMART | SM00343 | c2hcfinal6 | 202 | 218 | 0.057 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 2.6E-36 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 176 | 192 | 0.022 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 18.494757 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 177 | 192 | 8.976924 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 755 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_047092082.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Lolium rigidum] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3J7T6 | E3 ubiquitin ligase PQT3-like OS=Brachypodium distachyon OX=15368 GN=100831001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology