Basic Information
Locus ID:
Pt_Chr0104603
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 155905962 | 155911075 | - | Pt_Chr0104603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 58,991.17 Da | 64.87 | 46.37 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08783 | DWNN domain | 4 | 82 | 1.8E-22 | IPR014891 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 7.9E-22 | - |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 2.6E-36 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 18.494757 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 531 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047092082.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Lolium rigidum] | 0 |
| P97868 | E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5 | 0 | |
| TrEMBL | F2EK12 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology