Basic Information
Locus ID:
Pt_Chr0104570
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 155261391 | 155265252 | + | Pt_Chr0104570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 97,107.06 Da | 56.37 | 90.30 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 136 | 226 | 1.32514E-17 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 291 | 374 | 2.97088E-21 | - |
| Pfam | PF00651 | BTB/POZ domain | 135 | 208 | 1.9E-14 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 647 | 722 | 1.1E-12 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 286 | 386 | 1.7E-16 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 646 | 768 | 2.51E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 135 | 207 | 4.32E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 279 | 390 | 3.92E-20 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 9 | 603 | 4.22E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 3 | 79 | 1.2E-12 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 269 | 425 | 7.3E-26 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 640 | 790 | 1.4E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 131 | 254 | 4.0E-17 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 463 | 615 | 9.9E-10 | IPR036770 |
| SMART | SM00225 | BTB_4 | 135 | 231 | 1.4E-11 | IPR000210 |
| SMART | SM00225 | BTB_4 | 647 | 772 | 6.5E-11 | IPR000210 |
| SMART | SM00225 | BTB_4 | 292 | 391 | 3.1E-18 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 38 | 63 | 9.190411 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 38 | 63 | 9.171131 | - |
| ProSiteProfiles | PS50097 | BTB domain profile. | 292 | 354 | 16.155687 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 647 | 715 | 16.962286 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 135 | 200 | 18.037748 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04740.1 | ankyrin repeat family protein. | 0 |
| RefSeq | XP_051229263.1 | BTB/POZ domain-containing protein At2g04740-like [Lolium perenne] | 0 |
| Q9SJ85 | BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana OX=3702 GN=At2g04740 PE=2 SV=2 | 0 | |
| TrEMBL | A0A194YIW2 | Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Sorghum bicolor OX=4558 GN=SORBI_3010G131300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19096 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25494 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038267 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14615, Sbi_jg53753, Sbi_jg53755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10415 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012700 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78250, Sgl80745 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014973, gene:ENSEOMG00000037275 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0002510, CQ.Regalona.r1.9BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017560 |
| Apiaceae | Apium graveolens | 1 | Ag2G00129 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697422 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2088.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G28600 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G04740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002462m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g23370.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g010520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2308 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2398 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g18970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2180 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031939 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31612, Lb6G31615 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1292, BH06.1336, CH06.1480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0519000, gene-QOZ80_6BG0471100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0675160.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_009276, gene-QYE76_009277, gene-QYE76_029568 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G008180, Oco12G008200 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g21330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G131400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104570, Pt_Chr0105680 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G001670, Chr11G016880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G410300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG028660, gene_TRIDC7BG019850 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G224500.3, TraesCS7B02G191100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb281240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28955 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29594 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2225, evm.TU.LG02.2226, evm.TU.LG23.457 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1412 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20350, nbisL1-mrna-20554 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1967 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21404 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.883 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13877 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4661 |
| Salicaceae | Populus euphratica | 1 | populus_peu26935 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617413 |
| Solanaceae | Solanum chilense | 1 | SOLCI001173700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024329 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_159 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0229 |