Basic Information
Locus ID:
Pt_Chr0104482
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 152374130 | 152378442 | - | Pt_Chr0104482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 69,957.83 Da | 52.73 | 87.15 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 123 | 6.10483E-46 | - |
| Pfam | PF03000 | NPH3 family | 214 | 469 | 1.4E-93 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 29 | 115 | 1.4E-9 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 115 | 1.57E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 134 | 3.3E-15 | IPR011333 |
| SMART | SM00225 | BTB_4 | 30 | 126 | 9.7E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 30 | 98 | 13.032705 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 214 | 493 | 92.603386 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 609 | - | - |
| Coils | Coil | Coil | 603 | 628 | - | - |
| Coils | Coil | Coil | 534 | 568 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_047091927.1 | BTB/POZ domain-containing protein At1g30440-like [Lolium rigidum] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453LQW8 | BTB/POZ domain-containing protein At1g30440 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology