Basic Information
Locus ID:
Pt_Chr0104448
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 150875633 | 150877654 | - | Pt_Chr0104448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 27,671.24 Da | 48.91 | 72.47 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 127 | 235 | 4.5E-57 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 128 | 227 | 1.57E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 124 | 240 | 8.6E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 128 | 228 | 22.417866 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_047087713.1 | auxin-responsive protein IAA30-like [Lolium rigidum] | 0 |
| Q75GK0 | Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA11 PE=2 SV=1 | 0 | |
| TrEMBL | M7ZNQ0 | Auxin-responsive protein OS=Triticum urartu OX=4572 GN=TRIUR3_01367 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology